1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctgaccatctgtattgttgatattgtcattagtcttacatctggtcagtcagaaggctttcaaacatgtttttgagttctttctaattttttcccccagAGTGCTCCAATTTCAGTACTGGAGAAGCATGAGCTTGCAAGCATGACCCTGGATTACAGGAAGGAGTGTGGTCGAGACAGCGTGCTGCAATCACTTACCA
species | Oryza sativa |
transcript | LOC_Os11g43820.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGGTGGATCCTTGAG AGTGCTCCAATTTCAGTACTGGAGAAGCATGAGCTTGCAAGCATGACCCTGEST: gi|86885833|gb|CI295856.1|CI295856
genomic: TTGGGTGGATCCTTGAGgtggttattc ... tttcccccagAGTGCTCCAATTTCAGTACTGGAGAAGCATGAGCTTGCAAGCATGACCCTG
EST: ATGTCAATCAGCATGTGAACAATGTTAAATATATTGGGTGGATCCTTGAG AGTGCTCCAATTTCAGTACTGGAGAAGCATGAGCTTGCAAGCATGACCCTGEST: gi|88670436|gb|CI724552.1|CI724552
genomic: ATGTCAATCAGCATGTGAACAATGTTAAATATATTGGGTGGATCCTTGAGgtggttattc ... tttcccccagAGTGCTCCAATTTCAGTACTGGAGAAGCATGAGCTTGCAAGCATGACCCTG
EST: TTGGGTGGATCCTTGAG AGTGCTCCAATTTCAGTACTGGAGAAGCATGAGCTTGCAAGCATGACCCTG
genomic: TTGGGTGGATCCTTGAGgtggttattc ... tttcccccagAGTGCTCCAATTTCAGTACTGGAGAAGCATGAGCTTGCAAGCATGACCCTG
tcagtcagaaggctttcaaacatgtttttgagttctttctaattttttcccccagAGTGCTCCAATTTCAGTACTGGAGAAGCATGAGCTTGCAAGCATGACCCTGGATTACAGGAAGGAGTGTGGTCGAGACAGCGTGCTGCAATCACTTACCA
ttctaat putative branch site (score: 32)
ttctttctaatttttt CT-rich tract
ttctttctaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgaccatctgtattgttgatattgtcattagtcttacatctggtcagtcagaaggctttcaaacatgtttttgagttctttctaattttttcccccagAGTGCTCCAATTTCAGTACTGGAGAAGCATGAGCTTGCAAGCATGACCCTGGATTACAGGAAGGAGTGTGGTCGAGACAGCGTGCTGCAATCACTTACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - catctgt
- - - - - - - ttgttga
- - - - - - - - - - - - - - - - - cttacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gctttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatgt