1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatccgtactgcttttagatttgtaaagttcaccttggggaaatgttttcatgctttccttttattttcgcaccaaaggaagcttattcttaacctgcagGCTGCCATTCGTCCGCCAACGTTTGTTTTCTTTGTTAACGATGCAAAACTTTTCCCCGAGACATTCCGTCGTTACATGGAAAAGAAGCTTCGCTCTGATG
species | Oryza sativa |
transcript | LOC_Os11g41910.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACCACGAACAAGAGGTGGTAAAAGAGGTCGTGTTTATTACACAACACAG GCTGCCATTCGTCCGCCAACGTTTGTTTTCTTTGTTAACGATGCAAAACTTEST: gi|44665269|gb|CR278703.1|CR278703
genomic: CACCACGAACAAGAGGTGGTAAAAGAGGTCGTGTTTATTACACAACACAGgtagcttcta ... taacctgcagGCTGCCATTCGTCCGCCAACGTTTGTTTTCTTTGTTAACGATGCAAAACTT
EST: CACCACGAACAAGAGGTGGTAAAAGAGGTCGTGTTTATTACACAACACAG GCTGCCATTCGTCCGCCAACGTTTGTTTTCTTTGTTAACGATGCAAAACTT
genomic: CACCACGAACAAGAGGTGGTAAAAGAGGTCGTGTTTATTACACAACACAGgtagcttcta ... taacctgcagGCTGCCATTCGTCCGCCAACGTTTGTTTTCTTTGTTAACGATGCAAAACTT
ttttcatgctttccttttattttcgcaccaaaggaagcttattcttaacctgcagGCTGCCATTCGTCCGCCAACGTTTGTTTTCTTTGTTAACGATGCAAAACTTTTCCCCGAGACATTCCGTCGTTACATGGAAAAGAAGCTTCGCTCTGATG
tcttaac putative branch site (score: 11)
cttattctt CT-rich tract
tttccttttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatccgtactgcttttagatttgtaaagttcaccttggggaaatgttttcatgctttccttttattttcgcaccaaaggaagcttattcttaacctgcagGCTGCCATTCGTCCGCCAACGTTTGTTTTCTTTGTTAACGATGCAAAACTTTTCCCCGAGACATTCCGTCGTTACATGGAAAAGAAGCTTCGCTCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - ctgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccaaa