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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG

Basic information

species Oryza sativa
transcript LOC_Os11g40510.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
           | | | |||  ||  | |  | | |||     | ||| ||  |     ||||||||| | ||  ||  |  |||  || |    | || |    | |  || |      |  |   |   |||| ||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||| || ||||||
---------gtaagca-ctgcctggctctcatctctcctccatttact-tgtcattgttgacattttagcagagtggcttgctacttgt-gcagtacatgacatgtctatttaccagtttagcttggtaacttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G008611_T01 (Zea mays), 3'ss of exon 7
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
           | | | |||  ||  | |  | | |||     | ||| ||  |     ||||||||| | ||  ||  |  |||  || |    | || |    | |  || ||     |  |   |   |||| |||||||||||| || |||||||| |||||||| |||||||||||||| |||||||||||||||||||| || ||||||
---------gtaagca-ctgcctggctctcatctctcctccatttact-tgtcattgttgacattttagcagagtggcttgctacttgt-gcagtacatgacatgtctatttactagtttagcttggtaacttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA07G04640.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------gtaagtgtt-tcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgca------ttttctttcttacccatatgtatttttttt-------ccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                                                ||  |||  |  || |  ||  |  || | | ||   |     |         |  ||     | | |  |||  | | |       ||| ||    ||||||        ||   ||   |   ||||| |||||||| |       |||||||||| ||||| |||||||||||||| ||||| || || || || ||||| |||||||| ||| | || || |||
gtaagtttcactctcatgatttcttagtaaaacagtcgcctctttctttatttgtagtttcggacttgaatcaatctctgttcatccaaaatggaaaaaaaaattgtactgtctcaaaggatagttgtacggtatgttctttgcaattatgttggtaacttagattggctcatcatatttattttttctggcggctccagAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA13G17200.2 (Glycine max), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagt----tctcactctgctagctgc----gacattttatcggaag----ggtattttaccagttgttcaagattatgcattttctttcttaccc--atatg----------tattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
|||||| ||| |  || |  | | |||||||  ||  || |    | | | | ||     | |    || ||||| | |||||    | ||  | |     | |   | || |     | | | |  || |   |||||          ||| ||  || ||| ||||| |||||||||||||||||||| || || || ||||| || ||||| |||||||||||  | |||||||||
gtaagt-ttttatataccc-tctctatttttccttctcattgctattttattttgtggtttacttcagatattttgttggaagtgcagatacctgaatgtatatgtgaaatcaattcatatttgtagtatcatgatatggtaattatggtatgttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA17G05530.4 (Glycine max), 3'ss of exon 7
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                               |       |    ||  |||||| | || | | | | | || |||      |  | |     ||    ||| || |   ||   |||   |  |  | ||  || ||| ||||| |||||||||||||||||||| || || || ||||| || ||||| |||||||||||  | |||||||||
-----------------------------gatcaaaattgcggccatcctgcta-ccgctatagtgttttgggagg-----ctgaccgccacgcactgctatccacta--ttgactact--ttggcttgttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA16G01230.1 (Glycine max), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                               | |||  | |     |  || ||| ||     | |  ||   |    ||| |    ||   | |   |    |||  | ||  ||   |    |         ||||||||||||||||| |||||||||||||| ||||| || || || || ||||| |||||||| ||| | ||||| |||
------------------------------atatttgtactgtctcccatgatagttgtacggtgtgttctataca--attgtgttggtaacttagcttggctcatcattttattttttctggcgg-------ctccagAGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: AT1G17370.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                       |||  |||||| | |  | ||||           ||    || ||| ||||  | |           ||| |||||| ||||    || |     | ||   |||| | | |  || ||||| || || |||||||||||||||||||| || || ||||| ||||| |||||||| ||| | || || |||
-----------------------gtaagttttttataccatcctca-----------gcattcttgtattggaaatggaa----------gtttaagatt-tgcagaaactcttccgacaattgctattgtatgt--agGGATGCAAGAGTTATGTGGGATCAGAAAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: AT1G54080.2 (Arabidopsis thaliana), 3'ss of exon 6
-------------------------------------------gta-agtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtat-tttaccagttgttcaagattatgcattttctttcttacccatatgtatttttt-ttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                                            || |    |  |  | |   |    |  |    | | |   | |  | ||    | | | | ||||| |   | |  ||   |||   |||     ||  |||     |  ||  ||    || | || || || ||  || || || || ||||||||||| |||||||||||||| || ||||| |||||||||||||| ||| | |||||||||
gtaagttcttgtgcttggtcttctgattttagttactagctggttacaaaaatgaaaatcttgttacacaactacggtgtacgcatatatcactatgtgttacaagattttctttaatgattaagcttatttgtttaaacagtctatcagaatctttgatttaatatctatagTTCTTATTATAGGGACGCAAGAGTAATGTGGGACCAGAAAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttaccc-atatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                                      |     |  |    | ||       |||| |     |  | | | |    ||        || || || ||    || |    ||  || || |  |  ||||||||||||||| |||||||||||||||||||| || || || |||||||| |||||||||||| | || ||||||
------------------------------------gtaagctccgtttgcatggcctttttgttttcttctttgaatttgtgattgattaactttccttgtgtatgttgagactaatttgatccgtgttctggtatcagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                                      | |    ||||  |||| |    | | ||||    |    |   || |  ||  |     |   | |   |   |   |   || | | |  |  ||  |||||||| ||||| |||||||||||||| ||||| || || ||||| ||||| |||||||||||| | ||||| |||
-------------------------------------gaatgtggactc-actagttagaccttattatgattaaatgaagctatcttttactttcattgtcggaaaatagatgacatt-atgtttgtgctggttttagAGATGCGAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688359|gb|CK077046.1|CK077046
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|86897973|gb|CI290697.1|CI290697
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAG
EST: gi|87012285|gb|CI293335.1|CI293335
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGAT
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGAT
EST: gi|58687280|gb|CK075967.1|CK075967
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|87006051|gb|CI289468.1|CI289468
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58602505|gb|CK013033.1|CK013033
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|33680119|gb|CF308358.1|CF308358
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58681227|gb|CK069914.1|CK069914
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGAT
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGAT
EST: gi|88572117|gb|CI663688.1|CI663688
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|86905007|gb|CI289154.1|CI289154
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|88321854|gb|CI672999.1|CI672999
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCACAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58678674|gb|CK067361.1|CK067361
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58690866|gb|CK079553.1|CK079553
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|87022688|gb|CI293578.1|CI293578
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTNGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58694246|gb|CK082933.1|CK082933
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|25797088|gb|CA753049.1|CA753049
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|218500911|gb|FG960833.1|FG960833
EST:     GTAACAGATGCTGCATTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58597389|gb|CK007917.1|CK007917
EST:     TAACAGATGCTGCTTTGTTGTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: TAACAGATGCTGCTTTGTT-TGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58606512|gb|CK034545.1|CK034545
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58601763|gb|CK012291.1|CK012291
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTAGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|86596642|gb|CI286555.1|CI286555
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|87004665|gb|CI300987.1|CI300987
EST:     CAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: CAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 163

GCCATTTTAATATTTTTGTTGGCGATCTTTGCCCGGAAGTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                           ttcttac  putative branch site (score: 163)
                                       tgtattttttttcc  putative PPT
                                    atatgtatttttttt  TA-rich tract