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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG

Basic information

species Oryza sativa
transcript LOC_Os11g40510.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
           | | | |||  ||  | |  | | |||     | ||| ||  |     ||||||||| | ||  ||  |  |||  || |    | || |    | |  || |      |  |   |   |||| ||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||| || ||||||
---------gtaagca-ctgcctggctctcatctctcctccatttact-tgtcattgttgacattttagcagagtggcttgctacttgt-gcagtacatgacatgtctatttaccagtttagcttggtaacttttgcagAGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G008611_T01 (Zea mays), 3'ss of exon 7
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
           | | | |||  ||  | |  | | |||     | ||| ||  |     ||||||||| | ||  ||  |  |||  || |    | || |    | |  || ||     |  |   |   |||| |||||||||||| || |||||||| |||||||| |||||||||||||| |||||||||||||||||||| || ||||||
---------gtaagca-ctgcctggctctcatctctcctccatttact-tgtcattgttgacattttagcagagtggcttgctacttgt-gcagtacatgacatgtctatttactagtttagcttggtaacttttgcagAGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA07G04640.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------gtaagtgtt-tcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgca------ttttctttcttacccatatgtatttttttt-------ccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                                                ||  |||  |  || |  ||  |  || | | ||   |     |         |  ||     | | |  |||  | | |       ||| ||    ||||||        ||   ||   |   ||||| |||||||| |       |||||||||| ||||| |||||||||||||| ||||| || || || || ||||| |||||||| ||| | || || |||
gtaagtttcactctcatgatttcttagtaaaacagtcgcctctttctttatttgtagtttcggacttgaatcaatctctgttcatccaaaatggaaaaaaaaattgtactgtctcaaaggatagttgtacggtatgttctttgcaattatgttggtaacttagattggctcatcatatttattttttctggcggctccagAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAACCAACAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA13G17200.2 (Glycine max), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagt----tctcactctgctagctgc----gacattttatcggaag----ggtattttaccagttgttcaagattatgcattttctttcttaccc--atatg----------tattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
|||||| ||| |  || |  | | |||||||  ||  || |    | | | | ||     | |    || ||||| | |||||    | ||  | |     | |   | || |     | | | |  || |   |||||          ||| ||  || ||| ||||| |||||||||||||||||||| || || || ||||| || ||||| |||||||||||  | |||||||||
gtaagt-ttttatataccc-tctctatttttccttctcattgctattttattttgtggtttacttcagatattttgttggaagtgcagatacctgaatgtatatgtgaaatcaattcatatttgtagtatcatgatatggtaattatggtatgttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA17G05530.4 (Glycine max), 3'ss of exon 7
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                               |       |    ||  |||||| | || | | | | | || |||      |  | |     ||    ||| || |   ||   |||   |  |  | ||  || ||| ||||| |||||||||||||||||||| || || || ||||| || ||||| |||||||||||  | |||||||||
-----------------------------gatcaaaattgcggccatcctgcta-ccgctatagtgttttgggagg-----ctgaccgccacgcactgctatccacta--ttgactact--ttggcttgttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGGTTTGTTTCTTTTCGGAATCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA16G01230.1 (Glycine max), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                               | |||  | |     |  || ||| ||     | |  ||   |    ||| |    ||   | |   |    |||  | ||  ||   |    |         ||||||||||||||||| |||||||||||||| ||||| || || || || ||||| |||||||| ||| | ||||| |||
------------------------------atatttgtactgtctcccatgatagttgtacggtgtgttctataca--attgtgttggtaacttagcttggctcatcattttattttttctggcgg-------ctccagAGATGCTAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: AT1G17370.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                       |||  |||||| | |  | ||||           ||    || ||| ||||  | |           ||| |||||| ||||    || |     | ||   |||| | | |  || ||||| || || |||||||||||||||||||| || || ||||| ||||| |||||||| ||| | || || |||
-----------------------gtaagttttttataccatcctca-----------gcattcttgtattggaaatggaa----------gtttaagatt-tgcagaaactcttccgacaattgctattgtatgt--agGGATGCAAGAGTTATGTGGGATCAGAAAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: AT1G54080.2 (Arabidopsis thaliana), 3'ss of exon 6
-------------------------------------------gta-agtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtat-tttaccagttgttcaagattatgcattttctttcttacccatatgtatttttt-ttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                                            || |    |  |  | |   |    |  |    | | |   | |  | ||    | | | | ||||| |   | |  ||   |||   |||     ||  |||     |  ||  ||    || | || || || ||  || || || || ||||||||||| |||||||||||||| || ||||| |||||||||||||| ||| | |||||||||
gtaagttcttgtgcttggtcttctgattttagttactagctggttacaaaaatgaaaatcttgttacacaactacggtgtacgcatatatcactatgtgttacaagattttctttaatgattaagcttatttgtttaaacagtctatcagaatctttgatttaatatctatagTTCTTATTATAGGGACGCAAGAGTAATGTGGGACCAGAAAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttaccc-atatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                                      |     |  |    | ||       |||| |     |  | | | |    ||        || || || ||    || |    ||  || || |  |  ||||||||||||||| |||||||||||||||||||| || || || |||||||| |||||||||||| | || ||||||
------------------------------------gtaagctccgtttgcatggcctttttgttttcttctttgaatttgtgattgattaactttccttgtgtatgttgagactaatttgatccgtgttctggtatcagAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG

upper sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                                      | |    ||||  |||| |    | | ||||    |    |   || |  ||  |     |   | |   |   |   |   || | | |  |  ||  |||||||| ||||| |||||||||||||| ||||| || || ||||| ||||| |||||||||||| | ||||| |||
-------------------------------------gaatgtggactc-actagttagaccttattatgattaaatgaagctatcttttactttcattgtcggaaaatagatgacatt-atgtttgtgctggttttagAGATGCGAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688359|gb|CK077046.1|CK077046
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|86897973|gb|CI290697.1|CI290697
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAG
EST: gi|87012285|gb|CI293335.1|CI293335
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGAT
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGAT
EST: gi|58687280|gb|CK075967.1|CK075967
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|87006051|gb|CI289468.1|CI289468
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58602505|gb|CK013033.1|CK013033
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|33680119|gb|CF308358.1|CF308358
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58681227|gb|CK069914.1|CK069914
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGAT
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGAT
EST: gi|88572117|gb|CI663688.1|CI663688
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|86905007|gb|CI289154.1|CI289154
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|88321854|gb|CI672999.1|CI672999
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCACAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58678674|gb|CK067361.1|CK067361
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58690866|gb|CK079553.1|CK079553
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|87022688|gb|CI293578.1|CI293578
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTNGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58694246|gb|CK082933.1|CK082933
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|25797088|gb|CA753049.1|CA753049
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|218500911|gb|FG960833.1|FG960833
EST:     GTAACAGATGCTGCATTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58597389|gb|CK007917.1|CK007917
EST:     TAACAGATGCTGCTTTGTTGTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: TAACAGATGCTGCTTTGTT-TGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58606512|gb|CK034545.1|CK034545
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|58601763|gb|CK012291.1|CK012291
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTAGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|86596642|gb|CI286555.1|CI286555
EST:     GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: GTAACAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
EST: gi|87004665|gb|CI300987.1|CI300987
EST:     CAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTC                         AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG
genomic: CAGATGCTGCTTTGTTTGCTTTTTTCGCTGGATTTACCAGTTGCTCgtaagtgttt ... ttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagAGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAG
                           ttcttac  putative branch site (score: 2)
                                       tgtattttttttcc  putative PPT
                                    atatgtatttttttt  TA-rich tract