1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttggttattacttggttgaaagctgaaactatctcctgcagactccaatgtattttctttaatattatgctctctgatgttctttgacattcatttgcagTTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGG
species | Oryza sativa |
transcript | LOC_Os11g40080.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCCTGTTGTGATATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAG TTATCAGACGAGCTCCTCEST: gi|86900533|gb|CI298368.1|CI298368
genomic: CCCTGTTGTGATATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAGgtgagcagtg ... tcatttgcagTTATCAGACGAGCTCCTC
EST: CCCTGTTGTGATATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAG TTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGGEST: gi|58689879|gb|CK078566.1|CK078566
genomic: CCCTGTTGTGATATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAGgtgagcagtg ... tcatttgcagTTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGG
EST: CCCTGTTGTGATATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAG TTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGG
genomic: CCCTGTTGTGATATCTCCTGATGGGCTATTTCCATCACTTTACAGAGAAGgtgagcagtg ... tcatttgcagTTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGG
caatgtattttctttaatattatgctctctgatgttctttgacattcatttgcagTTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGG
ctttgac putative branch site (score: 18)
ttcattt CT-rich tract
tattttctttaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggttattacttggttgaaagctgaaactatctcctgcagactccaatgtattttctttaatattatgctctctgatgttctttgacattcatttgcagTTATCAGACGAGCTCCTCACGAATTCAAGATCTCATGCCTAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - agctgaa
- - - - - - - - - - - - - - - - ctcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt