1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttggctaaagataaatcttctttacagtccatgatttttctacaaattttagttggattttctctttgatggatgttgtgactaacatctgcatccactatttggaagaaagGGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTTCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT
species | Oryza sativa |
transcript | LOC_Os11g36070.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAG GGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTTEST: gi|29626153|gb|CB631164.1|CB631164
genomic: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAGgttggctaaa ... tggaagaaagGGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTT
EST: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAG GGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTTEST: gi|29665385|gb|CB661660.1|CB661660
genomic: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAGgttggctaaa ... tggaagaaagGGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTT
EST: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAACAAATTTCTTTGGTCAG GGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTTEST: gi|25778077|gb|CA752829.1|CA752829
genomic: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAGgttggctaaa ... tggaagaaagGGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTT
EST: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAG GGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGTTCTTCTTCACTACTTEST: gi|29623258|gb|CB628269.1|CB628269
genomic: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAGgttggctaaa ... tggaagaaagGGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTT
EST: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAG GGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTTEST: gi|29626975|gb|CB631986.1|CB631986
genomic: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAGgttggctaaa ... tggaagaaagGGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTT
EST: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAG GGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTTEST: gi|29623293|gb|CB628304.1|CB628304
genomic: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAGgttggctaaa ... tggaagaaagGGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTT
EST: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAC GGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTT
genomic: TCAGGCTGTTTGAAGAAGGTTCGGGTTGGTGAAGAAATTTCTTTGGTCAGgttggctaaa ... tggaagaaagGGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTT
ttttctctttgatggatgttgtgactaacatctgcatccactatttggaagaaagGGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTTCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT
gactaac putative branch site (score: 1)
actattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggctaaagataaatcttctttacagtccatgatttttctacaaattttagttggattttctctttgatggatgttgtgactaacatctgcatccactatttggaagaaagGGTGAAGGTTCCATGGCCAGTTTCGGAGAGAGAAGCTCTTCTTCACTACTTCGAATTAGAGTATCTTAAAGAAGATCTTGTCATTGTAATCATGAAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG