1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttaattgaaaagcattcctttgatttcttggtcctcatcaattcggttaagagttttgcactgtagatgttatgactccattaaaagttttgcgctgtagaacctaactctagatgaaagttgccctcctcctcatgggaaagttctatttctaattatcttttgattaatctccagGGCAAGAGGTTGTTGGATTCCAACGGTAACCAACATACACAGCCTGCTGCTCCAAGCATTAATATGTTCCATGAAGAGCTTGAGAGTGAGGACTACATAT
species | Oryza sativa |
transcript | LOC_Os11g35340.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAGCACCTTTGGTGATGGCTTCCATTATTTCTTCTATATTCTTAAAAAG GGCAAGAGGTTGTTGGATTCCAACGGTAACCAACATACACAGCCTGCTGCTEST: gi|86539343|gb|CI179549.1|CI179549
genomic: GGAGCACCTTTGGTGATGGCTTCCATTATTTCTTCTATATTCTTAAAAAGgtttaattga ... taatctccagGGCAAGAGGTTGTTGGATTCCAACGGTAACCAACATACACAGCCTGCTGCT
EST: GGAGCACCTTTGGTGATGGCTTCCATTATTTCTTCTATATTCTTAAAAAG GGCAAGAGGTTGTTGGATTCCAACGGTAACCAACATACACAGCCTGCTGCTEST: gi|88268676|gb|CI378611.1|CI378611
genomic: GGAGCACCTTTGGTGATGGCTTCCATTATTTCTTCTATATTCTTAAAAAGgtttaattga ... taatctccagGGCAAGAGGTTGTTGGATTCCAACGGTAACCAACATACACAGCCTGCTGCT
EST: GGAGCACCTTTGGTGATGGCTTCCATTATTTCTTCTATATTCTTAAAAAG GGCAAGAGGTTGTTGGATTCCAACGGTAACCAACATACACAGCCTGCTGCTEST: gi|88251322|gb|CI349750.1|CI349750
genomic: GGAGCACCTTTGGTGATGGCTTCCATTATTTCTTCTATATTCTTAAAAAGgtttaattga ... taatctccagGGCAAGAGGTTGTTGGATTCCAACGGTAACCAACATACACAGCCTGCTGCT
EST: GGAGCACCTTTGGTGATGGCTTCCATTATTTCTTCTATATTCTTAAAAAG GGCAAGAGGTTGTTGGATTCCAACGGTAACCAACATACACAGCCTGCTGCT
genomic: GGAGCACCTTTGGTGATGGCTTCCATTATTTCTTCTATATTCTTAAAAAGgtttaattga ... taatctccagGGCAAGAGGTTGTTGGATTCCAACGGTAACCAACATACACAGCCTGCTGCT
gccctcctcctcatgggaaagttctatttctaattatcttttgattaatctccagGGCAAGAGGTTGTTGGATTCCAACGGTAACCAACATACACAGCCTGCTGCTCCAAGCATTAATATGTTCCATGAAGAGCTTGAGAGTGAGGACTACATAT
tctcc CT-rich tract
ttctatttctaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaattgaaaagcattcctttgatttcttggtcctcatcaattcggttaagagttttgcactgtagatgttatgactccattaaaagttttgcgctgtagaacctaactctagatgaaagttgccctcctcctcatgggaaagttctatttctaattatcttttgattaatctccagGGCAAGAGGTTGTTGGATTCCAACGGTAACCAACATACACAGCCTGCTGCTCCAAGCATTAATATGTTCCATGAAGAGCTTGAGAGTGAGGACTACATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT