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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattgcttgtgattttcattttttgtattcaaacttgaacttgtatagcatttattcaaataactgatttgattgtaaaaattttccagCACCGAATTTTTCTAGAATAACTGCCGCTGTTGGTATTTGGTCATGGGGTGCTATTTCTCTTGCCTTTGCTTCATTGGTGATGTTCTACAGAGTAAGCAG

Basic information

species Oryza sativa
transcript LOC_Os11g34860.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29658090|gb|CB654365.1|CB654365
EST:     TTGCTTTCTTATTGTCCTTATCACCCTTTTTCTGAACTCAATTATTTTTG                         CACCGAATTTTTCTAGAATAACTGCCGCTGTTGGTATTTGGTCATGGGGGG
genomic: TTGCTTTCTTATTGTCCTTATCACCCTTTTTCTGAACTCAATTATTTTTGgtaagcattg ... aattttccagCACCGAATTTTTCTAGAATAACTGCCGCTGTTGGTATTTGGTCATGGGGTG
EST: gi|27576416|gb|CA999110.1|CA999110
EST:     TTGCTTTCTTATTGTCCTTATCACCCTTTTTCTGAACTCAATTATTTTTG                         CACCGAATTTTTCTAGAATAACTGCCGCTGTTGGTATTTGGTCATGGGGTG
genomic: TTGCTTTCTTATTGTCCTTATCACCCTTTTTCTGAACTCAATTATTTTTGgtaagcattg ... aattttccagCACCGAATTTTTCTAGAATAACTGCCGCTGTTGGTATTTGGTCATGGGGTG
EST: gi|29618951|gb|CB623963.1|CB623963
EST:     TGCTTTCTTATTGTCCTTATCACCCTTTTTCTGAAACTCA-TTATTTTTG                         CACCGAATTTTTCTAGAATAACTGCCGCTGTTGGTATTTG
genomic: TGCTTTCTTATTGTCCTTATCACCCTTTTTCTGAA-CTCAATTATTTTTGgtaagcattg ... aattttccagCACCGAATTTTTCTAGAATAACTGCCGCTGTTGGTATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaacttgtatagcatttattcaaataactgatttgattgtaaaaattttccagCACCGAATTTTTCTAGAATAACTGCCGCTGTTGGTATTTGGTCATGGGGTGCTATTTCTCTTGCCTTTGCTTCATTGGTGATGTTCTACAGAGTAAGCAG
                                               ttttcc  CT-rich tract
               atttattcaaataact  TA-rich tract