1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtacataatatttgaattctgccagtaaaaaggtaactgaattgtgtatgtatatcatggaaaattcagttaaggttgccttttgtcatcattttgcagGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTG
species | Oryza sativa |
transcript | LOC_Os11g34850.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAG GTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGEST: gi|29683870|gb|CB680145.1|CB680145
genomic: TAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGgtaatttact ... cattttgcagGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTG
EST: TAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAG GTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGEST: gi|29683869|gb|CB680144.1|CB680144
genomic: TAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGgtaatttact ... cattttgcagGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTG
EST: TAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAG GTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTGEST: gi|29683929|gb|CB680204.1|CB680204
genomic: TAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGgtaatttact ... cattttgcagGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTG
EST: TAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAG GTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTG
genomic: TAACTAATCTGACAACTGGGAAGAGGCTTGAAAGCCTAGACAAAGCTGAGgtaatttact ... cattttgcagGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTG
tgtatgtatatcatggaaaattcagttaaggttgccttttgtcatcattttgcagGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTG
tcatttt CT-rich tract
tatatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtacataatatttgaattctgccagtaaaaaggtaactgaattgtgtatgtatatcatggaaaattcagttaaggttgccttttgtcatcattttgcagGTGTACTTCCATGATATACCAGATGAGATCATCGAAAACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - -ttctgcc
- - - - - - - - - - - - agtaaaa
- - - - - - - - - - - - - - - - - - - - - - gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catggaa