1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtttatcatgcaatgttcaaaaccgataaaacataaatacatacaatatagaagatggacaagtgttgcctaatcctctgtttctttttcctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGTCCGAATTGCAAATTTGATCATCCAATGGGAACTGTGATGTATGGTCTCG
species | Oryza sativa |
transcript | LOC_Os11g28270.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCGTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCG GGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGTEST: gi|58694326|gb|CK083013.1|CK083013
genomic: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCGgtaagggagt ... ctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGT
EST: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCG GGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGTEST: gi|87037579|gb|CI192201.1|CI192201
genomic: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCGgtaagggagt ... ctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGT
EST: TCCCTACTCCAAACTGTGCTTTGAGCTCATTAGGTCTTCCACTGCGTCCG GGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGTEST: gi|58682235|gb|CK070922.1|CK070922
genomic: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCGgtaagggagt ... ctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGT
EST: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCG GGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGTEST: gi|218478406|gb|FG958094.1|FG958094
genomic: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCGgtaagggagt ... ctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGT
EST: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCG GGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGTEST: gi|88255387|gb|CI354211.1|CI354211
genomic: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCGgtaagggagt ... ctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGT
EST: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCG GGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGTEST: gi|218478656|gb|FG958102.1|FG958102
genomic: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCGgtaagggagt ... ctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGT
EST: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCG GGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGTEST: gi|87037426|gb|CI192048.1|CI192048
genomic: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCGgtaagggagt ... ctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGT
EST: AACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCG GGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGTEST: gi|58679009|gb|CK067696.1|CK067696
genomic: AACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCGgtaagggagt ... ctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGT
EST: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTACG GGAGAGCCCATATGCACATTCTATTCTCGCTATG
genomic: TCCCTACTCCAAACTGTGCGTTGAGCTCATTAGGTCTTCCACTGCGTCCGgtaagggagt ... ctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATG
atatagaagatggacaagtgttgcctaatcctctgtttctttttcctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGTCCGAATTGCAAATTTGATCATCCAATGGGAACTGTGATGTATGGTCTCG
gcctaat putative branch site (score: 25)
cctaatcctctgtttc CT-rich tract
tttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttatcatgcaatgttcaaaaccgataaaacataaatacatacaatatagaagatggacaagtgttgcctaatcctctgtttctttttcctgcttgcagGGAGAGCCCATATGCACATTCTATTCTCGCTATGGCATCTGCAAGTTTGGTCCGAATTGCAAATTTGATCATCCAATGGGAACTGTGATGTATGGTCTCG
- - -tcatgca
- - - - - - - - - -aaaccga
- - - - - - - - - - - - - - - acataaa
- - - - - - - - - - - - - - - - - - - -catacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -gatggac