1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcactaatttgttagttctatttgattctgaaaactttgcacaccatgtggcatagacaaccatttgaggatacacctgattgacctttaatttctgcagGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTCATGGACAATGTTGAAGCAATGGAAGTCGACCAAACTGATTAAGTTTGTC
species | Oryza sativa |
transcript | LOC_Os11g20689.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAG GAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTCEST: gi|66918093|gb|CX104941.1|CX104941
genomic: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAGgtctgttagc ... atttctgcagGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTC
EST: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAG GAATGCATTAGCTTGGGTAAGGACAGGAGAAGAAAGTTEST: gi|427110|gb|D23191.1|D23191
genomic: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAGgtctgttagc ... atttctgcagGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTT
EST: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAG GAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTCEST: gi|8528015|gb|AU092830.1|AU092830
genomic: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAGgtctgttagc ... atttctgcagGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTC
EST: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAG GAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTCEST: gi|88222109|gb|CI222065.1|CI222065
genomic: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAGgtctgttagc ... atttctgcagGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTC
EST: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAG GAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTCEST: gi|88216864|gb|CI216466.1|CI216466
genomic: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAGgtctgttagc ... atttctgcagGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTC
EST: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAG GAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTCEST: gi|89184485|gb|CI047050.1|CI047050
genomic: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAGgtctgttagc ... atttctgcagGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTC
EST: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAG GAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTCEST: gi|218505093|gb|FG954677.1|FG954677
genomic: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAGgtctgttagc ... atttctgcagGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTC
EST: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAG GAATGCATTAGCTTEST: gi|88978109|gb|CI384591.1|CI384591
genomic: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAGgtctgttagc ... atttctgcagGAATGCATTAGCTT
EST: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAG GAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTC
genomic: TGTCAATACAAAAACCTGGAGGTGCAGTGACATCTATGACAACTATTAAGgtctgttagc ... atttctgcagGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTC
atgtggcatagacaaccatttgaggatacacctgattgacctttaatttctgcagGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTCATGGACAATGTTGAAGCAATGGAAGTCGACCAAACTGATTAAGTTTGTC
tttctgc CT-rich tract
tttaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactaatttgttagttctatttgattctgaaaactttgcacaccatgtggcatagacaaccatttgaggatacacctgattgacctttaatttctgcagGAATGCATTAGCTTGGCTAAGGACAGGAGAAGAAAGTTAAGAGAAATTCTCATGGACAATGTTGAAGCAATGGAAGTCGACCAAACTGATTAAGTTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - -gattctg
- - - - - - - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - - - catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg