1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...agattgagcatcctgtatcctgtacctcgttgagacttcttatagaaatgaaatgccatcagttaatgccaggcttatgaaatgtttcaaccaattgcagGTTATTGTCAAGAGTGGAGATGATTGCCGACAAGAACACCTAGCTGTACAGCTTGTTGCACACTTATATG
species | Oryza sativa |
transcript | LOC_Os11g10420.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACCTGGCTGGGATCTGCGTTCT GTTATTGTCAAGAGTGGAGATGATTGCCGACAAGAACACCTAGCTGTACAGEST: gi|88852251|gb|CI374019.1|CI374019
genomic: TACCTGGCTGGGATCTGCGTTCTgtaagttaca ... ccaattgcagGTTATTGTCAAGAGTGGAGATGATTGCCGACAAGAACACCTAGCTGTACAG
EST: TACGACGGTCTTCTGTTCATGGAAAATTACCTGGCTGGGATCTGCGTTCT GTTATTGTCAAGAGTGGAGATGATTGCCGACAAGAACACCTAGCTGTACAG
genomic: TACGACGGTCTTCTGTTCATGGAAAATTACCTGGCTGGGATCTGCGTTCTgtaagttaca ... ccaattgcagGTTATTGTCAAGAGTGGAGATGATTGCCGACAAGAACACCTAGCTGTACAG
aaatgaaatgccatcagttaatgccaggcttatgaaatgtttcaaccaattgcagGTTATTGTCAAGAGTGGAGATGATTGCCGACAAGAACACCTAGCTGTACAGCTTGTTGCACACTTATATG
agttaat putative branch site (score: 32)
ttatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agattgagcatcctgtatcctgtacctcgttgagacttcttatagaaatgaaatgccatcagttaatgccaggcttatgaaatgtttcaaccaattgcagGTTATTGTCAAGAGTGGAGATGATTGCCGACAAGAACACCTAGCTGTACAGCTTGTTGCACACTTATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - agcatcc
- - - - - - - - - cctgtac
- - - - - - - - - - - - - - - - - - - - - - -aaatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca