1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgaatacttcaattgtgtttatcaatttatttcaccatctttgcagaagaaattctttagttataatccacctttaattcttgctccttgtgcattacagTCTAAGTGAGATTCAGAGTGCTCGAGGAATTGTGGATGTGTTGGATGAGATGTTAAATGCTTTGGACCACAGGCACCCTGAG
species | Oryza sativa |
transcript | LOC_Os11g09329.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCGATACAAGCTTCTCTTCAATCTAGCGCCCCTTCTGCACCTGCCTTGAG TCTAAGTGAGATTCAGAGTGCTCGAGGAAEST: gi|29635153|gb|CB640162.1|CB640162
genomic: GCGATACAAGCTTCTCTTCAATCTAGCGCCCCTTCTGCACCTGCCTTGAGgtgttctttt ... tgcattacagTCTAAGTGAGATTCAGAGTGCTCGAGGAA
EST: GCGATACAAGCTTCTCTTCAATCTAGCGCCCCTTCTGCACCTGCCTTGAG TCTAAGTGAGATTCAGAGTGCTCGAGGAATTGTGGATGTGTTGGATGAGAT
genomic: GCGATACAAGCTTCTCTTCAATCTAGCGCCCCTTCTGCACCTGCCTTGAGgtgttctttt ... tgcattacagTCTAAGTGAGATTCAGAGTGCTCGAGGAATTGTGGATGTGTTGGATGAGAT
gaagaaattctttagttataatccacctttaattcttgctccttgtgcattacagTCTAAGTGAGATTCAGAGTGCTCGAGGAATTGTGGATGTGTTGGATGAGATGTTAAATGCTTTGGACCACAGGCACCCTGAG
ctttaat putative branch site (score: 4)
ttcttgctccttgt CT-rich tract
aattctttagttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatacttcaattgtgtttatcaatttatttcaccatctttgcagaagaaattctttagttataatccacctttaattcttgctccttgtgcattacagTCTAAGTGAGATTCAGAGTGCTCGAGGAATTGTGGATGTGTTGGATGAGATGTTAAATGCTTTGGACCACAGGCACCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - ttgtgtt
- - - - - - - - - - - - - - - ttcacca
- - - - - - - - - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - - - -gaagaaa