1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaaaacaaattgaatctagcaagcttattaagtaatatcaatgcaagacatgcaagtcttatgacaattggatcgtactgacgtgtgtttgttcttcagGCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAGCTGGTGCCGGAGCCATGGACCCCAGAGTCAGGACTCGTCACGGCTGCCC
species | Oryza sativa |
transcript | LOC_Os11g06880.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGTGAGAAGCAAGAGACTGTCAAAGAAGTCCTTCAATGTTTAGCAAAG GCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAGEST: gi|88511140|gb|CI438646.1|CI438646
genomic: TGTGTGAGAAGCAAGAGACTGTCAAAGAAGTCCTTCAATGTTTAGCAAAGgtgtgtattc ... tgttcttcagGCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAG
EST: TGTCAAAGAAGTCCTTCAATGTTTAGCAAAG GCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAGEST: gi|88829163|gb|CI074033.1|CI074033
genomic: TGTCAAAGAAGTCCTTCAATGTTTAGCAAAGgtgtgtattc ... tgttcttcagGCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAG
EST: CGTGTGAGAAGCAAGAGACTGTCAAAGAAGTCCTTCAATGTTTAGCAAAG GCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAGEST: gi|87029793|gb|CI274474.1|CI274474
genomic: TGTGTGAGAAGCAAGAGACTGTCAAAGAAGTCCTTCAATGTTTAGCAAAGgtgtgtattc ... tgttcttcagGCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAG
EST: TGTGTGAGAAGCAAGAGACTGTCAAAGAAGTCCTTCAATGTTTAGCAAAG GCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAGEST: gi|86500644|gb|CI143277.1|CI143277
genomic: TGTGTGAGAAGCAAGAGACTGTCAAAGAAGTCCTTCAATGTTTAGCAAAGgtgtgtattc ... tgttcttcagGCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAG
EST: GTGTGAGAAGCCAAGAGACTGTCAAAGAAGTCCTTCAATGTTTAGCAAAG GCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAGEST: gi|88512492|gb|CI439998.1|CI439998
genomic: GTGTGAGAAG-CAAGAGACTGTCAAAGAAGTCCTTCAATGTTTAGCAAAGgtgtgtattc ... tgttcttcagGCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAG
EST: GTGAGAAGCAAGAGACTGTCAAAGAAGTCCTTCAATGTTTAGCAAAG GCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAG
genomic: GTGAGAAGCAAGAGACTGTCAAAGAAGTCCTTCAATGTTTAGCAAAGgtgtgtattc ... tgttcttcagGCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAG
aagacatgcaagtcttatgacaattggatcgtactgacgtgtgtttgttcttcagGCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAGCTGGTGCCGGAGCCATGGACCCCAGAGTCAGGACTCGTCACGGCTGCCC
tactgac putative branch site (score: 6)
tttgttcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaaacaaattgaatctagcaagcttattaagtaatatcaatgcaagacatgcaagtcttatgacaattggatcgtactgacgtgtgtttgttcttcagGCTGCCAAGCAAGCGCGGCTGGAGAAGTTTGAGATCCCAGCCAAAGTCAAGCTGGTGCCGGAGCCATGGACCCCAGAGTCAGGACTCGTCACGGCTGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -aaacaaa
- - - - - - - - - agcaagc
- - - - - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtactg