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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcttggggtagatataagtaattgcttgcgtgcatatgattttataactcttgctagctttatttgcttgttcatcacatggttggcaacctgtcacagGTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTCCTTCCGCGTGGTTCACCAACAACCTGTTTACGACAAGAATCCCCAATCC

Basic information

species Oryza sativa
transcript LOC_Os11g05930.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58609126|gb|CK037159.1|CK037159
EST:     TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAG                         GTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC
genomic: TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAGgtactagttt ... cctgtcacagGTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC
EST: gi|29638597|gb|CB643606.1|CB643606
EST:     TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAG                         GTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC
genomic: TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAGgtactagttt ... cctgtcacagGTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC
EST: gi|33382037|gb|CF197380.1|CF197380
EST:     TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAG                         GTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC
genomic: TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAGgtactagttt ... cctgtcacagGTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taactcttgctagctttatttgcttgttcatcacatggttggcaacctgtcacagGTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTCCTTCCGCGTGGTTCACCAACAACCTGTTTACGACAAGAATCCCCAATCC
 ttataac  putative branch site (score: 2)
 tttattt  TA-rich tract