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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctaatcatataatttcaattgttcgaatttttctatatgacagtatgagccacatatctcattggcaattttccgctctcttgtattgtttgtttcagGTAGCATACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGCTCGCCGTCCATTTTCATGACACATACGGCCAAGCCCTTGCCAACAT

Basic information

species Oryza sativa
transcript LOC_Os11g04210.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g04210.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G095141_T01 (Zea mays), 3'ss of exon 5
-------------------------tgctaatcatataatttcaattgttcgaatttttctatatgacagtatg-agccacatatctcattggcaattttc----cgctctcttgtattgtttgtttcagGTAGCATACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGCTCGCCGTCCATTTTCATGACACATACGGCCAAGCCCTTGCCAACAT
                         |||||  |  |     |   | | ||  | |  | |    ||||||| |  |  | |     ||    | ||  ||    || | |       | | ||  ||||||||| |  ||||||||||| ||||||| ||||| ||||| || ||||||||| | ||||| ||||| || || || ||||| || ||||||||||||||
gtgtactactggttctctctgcctatgctatgccgaacccgttcgtggctctcagtcgttttctggacagtacgtggagagaccggccaaaaactatactcactgcgatttgcaaacgtctctgcctcagGTAGCGTGGTTGCTATGCTTCAAGCTGTCATGTCGTTTGTCCCGGTGGACAAGATTGCCGTTCATTTCCACGATACGTACGGGCAGGCCCTTGCCAACAT

upper sequence: LOC_Os11g04210.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G095141_T03 (Zea mays), 3'ss of exon 7
-----------------------tgctaatcatataatttcaattgttcgaatttttctatatgacagtatg-agccacatatctcattggcaattttc----cgctctcttgtattgtttgtttcagGTAGCATACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGCTCGCCGTCCATTTTCATGACACATACGGCCAAGCCCTTGCCAACAT
                       |||||  |  |     |   | | ||  | |  | |    ||||||| |  |  | |     ||    | ||  ||    || | |       | | ||  ||||||||| |  ||||||||||| ||||||| ||||| ||||| || ||||||||| | ||||| ||||| || || || ||||| || ||||||||||||||
gtactactggttctctctgcctatgctatgccgaacccgttcgtggctctcagtcgttttctggacagtacgtggagagaccggccaaaaactatactcactgcgatttgcaaacgtctctgcctcagGTAGCGTGGTTGCTATGCTTCAAGCTGTCATGTCGTTTGTCCCGGTGGACAAGATTGCCGTTCATTTCCACGATACGTACGGGCAGGCCCTTGCCAACAT

upper sequence: LOC_Os11g04210.2 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv06s0009g02640.t01 (Vitis vinifera), 3'ss of exon 6
tgctaatcatataatttcaattgttcgaattttt--ctatatgacagtatgagccacatatctcattggcaattttccgctctcttgtattgtttgtttcagGTAGCATACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGCTCGCCGTCCATTTTCATGACACATACGGCCAAGCCCTTGCCAACAT
 ||| |   |||    |   ||||   |||  ||   || ||| |||||  |   | | |    |      || |       || | |||| | ||| |||||   |||  || |||||||||||||||||||| || ||||||| || || ||||| || ||||| || |||||||| || || ||  | ||| | || ||
agcttaatgtatttgatagtttgtgtcaataattagttaaatg-cagtagaattaagaaagagaaaccatcatctataatcttcatttatt-tatgtatcagGCGCCATTGTTCCTATGCTTGAAGCTGTAATGGCTGTTGTTCCTGTTGAGAAGCTTGCTGTCCACTTCCATGACACTTATGGGCAGTCTCTTCCAAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgagccacatatctcattggcaattttccgctctcttgtattgtttgtttcagGTAGCATACTTGCTATGCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGCTCGCCGTCCATTTTCATGACACATACGGCCAAGCCCTTGCCAACAT
                                             tttgtttc  CT-rich tract
                                        tattgttt  TA-rich tract