1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtttttcatgcctttgtataataaattgaggcatgttctctttgtattacgttcaaatcttggccactgtaatttcagaaaaattctgttggtgctaatcactaatggtactcaacattgtgttattattttgcagCTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGATGTCTACAGTTTTGGGGTGGTTCTGCTGGAAGCTATTACAGGTAGAGAT
species | Oryza sativa |
transcript | LOC_Os11g01740.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTAGGTGCTGGTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGG CTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGAEST: gi|29624053|gb|CB629064.1|CB629064
genomic: CTAGGTGCTGGTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGGgtaagttttt ... tattttgcagCTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGA
EST: GTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGG CTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGA
genomic: GTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGGgtaagttttt ... tattttgcagCTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGA
aattctgttggtgctaatcactaatggtactcaacattgtgttattattttgcagCTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGATGTCTACAGTTTTGGGGTGGTTCTGCTGGAAGCTATTACAGGTAGAGAT
cactaat putative branch site (score: 40)
ttatttt putative PPT
attgtgttattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttcatgcctttgtataataaattgaggcatgttctctttgtattacgttcaaatcttggccactgtaatttcagaaaaattctgttggtgctaatcactaatggtactcaacattgtgttattattttgcagCTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGATGTCTACAGTTTTGGGGTGGTTCTGCTGGAAGCTATTACAGGTAGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG