1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagcagtttctgtacattttttgtgcatgtgctggaaattaccatgtgaaatggctgttaagtttggtctggttgatgcagGGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTG
species | Oryza sativa |
transcript | LOC_Os11g01420.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCAGTTCCGTCTGAACAAAG GGNCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCAEST: gi|27548175|gb|CA767467.2|CA767467
genomic: CCAGTT-CGTCTGAACAAAGgttagcagtt ... gttgatgcagGGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCA
EST: AATGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAG GGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCAEST: gi|86526028|gb|CI166234.1|CI166234
genomic: AATGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAGgttagcagtt ... gttgatgcagGGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCA
EST: AATGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAG GGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCAEST: gi|66915344|gb|CX102192.1|CX102192
genomic: AATGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAGgttagcagtt ... gttgatgcagGGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCA
EST: AATGGAACCCTTTCTACGCAAGCAAGGAATGCCAGTTCGTCTGAACAAAG GGGCGGTAGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCA
genomic: AATGGAACCCTTTCTACGCAAGCAAGGACTGCCAGTTCGTCTGAACAAAGgttagcagtt ... gttgatgcagGGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCA
atgtgctggaaattaccatgtgaaatggctgttaagtttggtctggttgatgcagGGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTG
ggttgat putative branch site (score: 22)
ttaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcagtttctgtacattttttgtgcatgtgctggaaattaccatgtgaaatggctgttaagtttggtctggttgatgcagGGGCGGTGGAATTAGTTGCAGATCACATAGTATGTGAAGAAGGGAAGCCCATTTCACCAGAAGCAGCACAAACTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC