Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgtcttgtaacatgaaacagagggaaacggagggagcagtaattgataaataagagggtgatgttaggcgtgcaatctgatccatacatacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTTGCCCTTCTGCGCCATCGCCTACGCCCTAACGGGGGTCGTCGCCTCGTTA

Basic information

species Oryza sativa
transcript LOC_Os10g42780.6
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g42780.6 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM5G873519_T02 (Zea mays), 3'ss of exon 7
aaatgtcttgtaacatgaaacagagggaaacggagggagcagtaattgataa-ataagagggtgatgttaggcgtgcaatctgatccatacatacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTTGCCCTTCTGCGCCATCGCCTACGCCCTAACGGGGGTCGTCGCCTCGTTA
                | ||   ||  |  |   |      || |   |||  || |   ||   ||   |   ||||||||   |          ||||| || || ||||||||||| |||||  || | |||||||| ||||||||| | || |||||||||||||| ||     | |||||| |  ||| | || | 
----------------gtaattcagccattcttcgtt--ttgtgaagcatagcatgattaggccctgactga-atgcaatcttgccttgctgatggtgcagCGCTCAAGGACTGGGAACAGCAGCACTGGCGGCCAAGGAACCTGAAGCGCTCCCTTTCTGCGCCATCGCTTATAGTTTCACGGGGATTTTCGGCACGCTG

upper sequence: LOC_Os10g42780.6 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G478212_T01 (Zea mays), 3'ss of exon 7
--aaatgtcttgtaaca-tgaaacagagggaaacggagggagcagtaattgataaataagagggtgatgttaggcgtgcaatctgatccatacatacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTTGCCCTTCTGCGCCATCGCCTACGCCCTAACGGGGGTCGTCGCCTCGTTA
  || | ||| |  ||| ||       |         |  | |  |  ||  | |  | | |  |||   ||  | |||    ||    ||  ||   || ||||| ||||||||||| || |||||  ||||||||||||| ||||||||| | || |||||||||||||| || |  || |||||  |  | | ||| || 
gtaattttctggatacaatgccgttctgcatcgtttggtaatccttcgtttgtgagcatgtgtctgaatgtaatcttgc---ttggctgatg-atg-gtgtagTGCTCATGGACTGGGGACAGCAGCACTGTCAGCCAAGGAACCTGAAGCGCTTCCTTTCTGCGCCATCGCTTATGGTCTCACGGGAATTTTTGGCTCCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88479841|gb|CI417112.1|CI417112
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88203285|gb|CI203134.1|CI203134
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88905858|gb|CI002196.1|CI002196
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88517653|gb|CI445307.1|CI445307
EST:     AAGCTTCGCCTCAAAAACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88669920|gb|CI724036.1|CI724036
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88665559|gb|CI715715.1|CI715715
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|86538615|gb|CI178821.1|CI178821
EST:     TCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: TCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88503616|gb|CI431122.1|CI431122
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88482268|gb|CI419539.1|CI419539
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88676201|gb|CI730314.1|CI730314
EST:     AAGCTTCGCCTCAAAGACCCCATCGNACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGANTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88674712|gb|CI728825.1|CI728825
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGNACCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88674598|gb|CI728711.1|CI728711
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88525375|gb|CI453376.1|CI453376
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88516766|gb|CI442422.1|CI442422
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88552990|gb|CI483055.1|CI483055
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88540518|gb|CI468569.1|CI468569
EST:     GACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: GACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88537215|gb|CI465037.1|CI465037
EST:     CACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: CACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88668108|gb|CI722847.1|CI722847
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88562740|gb|CI493457.1|CI493457
EST:     TAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: TAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88551433|gb|CI481490.1|CI481490
EST:     CCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: CCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88511414|gb|CI438920.1|CI438920
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88674693|gb|CI728806.1|CI728806
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATACGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGNAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88516177|gb|CI443831.1|CI443831
EST:     GGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: GGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|89171620|gb|CI720679.1|CI720679
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGACCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88671121|gb|CI725237.1|CI725237
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88673791|gb|CI727904.1|CI727904
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88503300|gb|CI430806.1|CI430806
EST:     CTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: CTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|86878387|gb|CI319620.1|CI319620
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88670306|gb|CI724422.1|CI724422
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88671301|gb|CI724347.1|CI724347
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88908739|gb|CI714881.1|CI714881
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88529307|gb|CI457613.1|CI457613
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|29676079|gb|CB672354.1|CB672354
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88511632|gb|CI439138.1|CI439138
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88669371|gb|CI723289.1|CI723289
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88373923|gb|CI508542.1|CI508542
EST:     GAATAGGGACGGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCANCCAAGGAGCCTGAAGCGTT
genomic: GAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|29626168|gb|CB631179.1|CB631179
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAACAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAACCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88287857|gb|CI510137.1|CI510137
EST:     GACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: GACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88513815|gb|CI441321.1|CI441321
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88905613|gb|CI712912.1|CI712912
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|86871131|gb|CI328333.1|CI328333
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGGCGT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAA-GCGT
EST: gi|88675191|gb|CI729304.1|CI729304
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|88673702|gb|CI727815.1|CI727815
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|8858775|gb|AU096093.1|AU096093
EST:     AAG-TTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
EST: gi|29626167|gb|CB631178.1|CB631178
EST:     AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAACAGGGACAGCTTCCAG                         TGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT
genomic: AAGCTTCGCCTCAAAGACCCCATCGCACGAGGAATAGGGACAGCTTCCAGgtaggatcac ... atacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgataaataagagggtgatgttaggcgtgcaatctgatccatacatacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTTGCCCTTCTGCGCCATCGCCTACGCCCTAACGGGGGTCGTCGCCTCGTTA
                                atctgat  putative branch site (score: 4)
     aaataaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatgtcttgtaacatgaaacagagggaaacggagggagcagtaattgataaataagagggtgatgttaggcgtgcaatctgatccatacatacatgcagTGCCCATGGACTGGGAACGGCAGCGGTGTCAGCCAAGGAGCCTGAAGCGTTGCCCTTCTGCGCCATCGCCTACGCCCTAACGGGGGTCGTCGCCTCGTTA

- -tgtcttg
- - - - - - -catgaaa
- - - - - - - - - - - - - - - - - -ggagcag
- - - - - - - - - - - - - - - - - - - - - - - - - aaataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccatac