1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgtcgtcgttgtcgccgacagcattaacctgcagctggtactcagtactgctactctttaggttgctgcatgctgacgtttttggtctcaatcatctgcagGAACTGCAGCTTGCGCGGGATCTGTCGCCTCACGCATCCGACAGTTACGAGTACGAGCTGTGAGCTTGGCGGAGGAATGTGTCGTTGCGAGGCAGAGTTT
species | Oryza sativa |
transcript | LOC_Os10g38920.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCATGGGGCACGTCGTCCATATGCTCGAAGATGACCTCAAATTCAGAGAT GAACTGCAGCTTGCGCGGGATCTGTCGCCTCACGCATCCGACAGTTACGAGEST: gi|88961105|gb|CI096508.1|CI096508
genomic: CCATGGGGCACGTCGTCCATATGCTCGAAGATGACCTCAAATTCAGAGATgtacgtcgtc ... tcatctgcagGAACTGCAGCTTGCGCGGGATCTGTCGCCTCACGCATCCGACAGTTACGAG
EST: CCATGGGGCACGTCGTCCATATGCTCGAAGATGACCTCAAATTCAGAGAT GAACTGCAGCTTGCGCGGGATCTGTCGCCTCACGCATCCGACAGTTACGAG
genomic: CCATGGGGCACGTCGTCCATATGCTCGAAGATGACCTCAAATTCAGAGATgtacgtcgtc ... tcatctgcagGAACTGCAGCTTGCGCGGGATCTGTCGCCTCACGCATCCGACAGTTACGAG
actgctactctttaggttgctgcatgctgacgtttttggtctcaatcatctgcagGAACTGCAGCTTGCGCGGGATCTGTCGCCTCACGCATCCGACAGTTACGAGTACGAGCTGTGAGCTTGGCGGAGGAATGTGTCGTTGCGAGGCAGAGTTT
tgctgac putative branch site (score: 2)
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtcgtcgttgtcgccgacagcattaacctgcagctggtactcagtactgctactctttaggttgctgcatgctgacgtttttggtctcaatcatctgcagGAACTGCAGCTTGCGCGGGATCTGTCGCCTCACGCATCCGACAGTTACGAGTACGAGCTGTGAGCTTGGCGGAGGAATGTGTCGTTGCGAGGCAGAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA