1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccacacttccattgttagttgttaggactagctggagatcatccacttgcactgtactgagctgttaataatattagcttcctaactgttttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGATGGTGTCACTAGATGGCTAGATTGATCCATCTACCCCAGGAGCCTAGGAC
species | Oryza sativa |
transcript | LOC_Os10g38900.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCG GTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGATEST: gi|88233198|gb|CI233047.1|CI233047
genomic: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCGgtatgccctg ... ttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGAT
EST: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCG GTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGATEST: gi|88270455|gb|CI385713.1|CI385713
genomic: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCGgtatgccctg ... ttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGAT
EST: AGGGGTCTTTACTGGATTGTGGCAAGGTGGTCAACCGCAAAATTCCTTCG GTTGTATTGGAGGTCTATAGTGAAATCCTCGCAGCTGTGAGTGAAGAAGATEST: gi|86496516|gb|CI139149.1|CI139149
genomic: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCGgtatgccctg ... ttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGAT
EST: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCG GTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGATEST: gi|87031815|gb|CI272516.1|CI272516
genomic: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCGgtatgccctg ... ttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGAT
EST: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCG GTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGATEST: gi|88838417|gb|CI374965.1|CI374965
genomic: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCGgtatgccctg ... ttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGAT
EST: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCG GTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGATEST: gi|86412641|gb|CI067046.1|CI067046
genomic: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCGgtatgccctg ... ttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGAT
EST: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCG GTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGATEST: gi|86434072|gb|CI094415.1|CI094415
genomic: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCGgtatgccctg ... ttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGAT
EST: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCG GTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGATEST: gi|86867644|gb|CI342645.1|CI342645
genomic: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCGgtatgccctg ... ttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGAT
EST: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCG GTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGAT
genomic: AGGGGTCTTTACTGGATTGTTGCAAGTTGGTCAACCGCAAAATTCCTTCGgtatgccctg ... ttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGAT
cttgcactgtactgagctgttaataatattagcttcctaactgttttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGATGGTGTCACTAGATGGCTAGATTGATCCATCTACCCCAGGAGCCTAGGAC
tcctaac putative branch site (score: 4)
ctgtttttttt CT-rich tract
ttaataatattagctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacacttccattgttagttgttaggactagctggagatcatccacttgcactgtactgagctgttaataatattagcttcctaactgttttttttgtagGTTGTATTGGAGGTCTATATTGAAATCCTCGCAGCTGTGAGTGAAGAAGATGGTGTCACTAGATGGCTAGATTGATCCATCTACCCCAGGAGCCTAGGAC
- - - - - - - - -gttgtta
- - - - - - - - - - - - - - - gctggag
- - - - - - - - - - - - - - - - - - - - - - acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctgtt