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gtatgctaaatgtacatttattttgactttataatctgtcagatgcaattgttgtattaaaatcttataccatgtgcagTTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTG
species | Oryza sativa |
transcript | LOC_Os10g36760.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAATGATGGTGACTTCCTCTTTCTACTGGCGGATGCAGCAGCTATTGCG TTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAGEST: gi|33796295|gb|CF324015.1|CF324015
genomic: CAAATGATGGTGACTTCCTCTTTCTACTGGCGGATGCAGCAGCTATTGCGgtatgctaaa ... ccatgtgcagTTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAG
EST: CAAATGATGGTGACTTCCTCTTTCTACTGGCGGATGCAGCAGCTATTGCG TTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAGEST: gi|5056122|gb|AU075501.1|AU075501
genomic: CAAATGATGGTGACTTCCTCTTTCTACTGGCGGATGCAGCAGCTATTGCGgtatgctaaa ... ccatgtgcagTTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAG
EST: CAAATGATGGTGACTTCCTCTTTCTANTGGCGGATGCAGCAGCTATTGCG TTCCAATACGGTAATCCTGATGCTTTGNGCTCCCCAATAGTTNAAAGCAAAEST: gi|33801565|gb|CF326654.1|CF326654
genomic: CAAATGATGGTGACTTCCTCTTTCTACTGGCGGATGCAGCAGCTATTGCGgtatgctaaa ... ccatgtgcagTTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAA-GCAAA
EST: CTTTCTACTGGCGGATGCAGCAGCTATTGCG TTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAGEST: gi|163918133|gb|EG713999.1|EG713999
genomic: CTTTCTACTGGCGGATGCAGCAGCTATTGCGgtatgctaaa ... ccatgtgcagTTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAG
EST: CAAATGATGGTGACTTCCTCTTTCTACTGGCGGATGCAGCAGCTATTGCG TTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAGEST: gi|33796974|gb|CF324350.1|CF324350
genomic: CAAATGATGGTGACTTCCTCTTTCTACTGGCGGATGCAGCAGCTATTGCGgtatgctaaa ... ccatgtgcagTTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAG
EST: CAAATGATGGTGACTTCCTCTTTCTACTGGCGGATGCAGCAGCTATTGCG TTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAG
genomic: CAAATGATGGTGACTTCCTCTTTCTACTGGCGGATGCAGCAGCTATTGCGgtatgctaaa ... ccatgtgcagTTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAG
gactttataatctgtcagatgcaattgttgtattaaaatcttataccatgtgcagTTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTG
ttttgac putative branch site (score: 34)
aattgttgtattaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctaaatgtacatttattttgactttataatctgtcagatgcaattgttgtattaaaatcttataccatgtgcagTTCCAATACGGTAATCCTGATGCTTTGTGCTCCCCAATAGTTGAAGCAAAGAAGAATGGCACAGATTTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG