1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aactgcctaaccttatgtctcaaaaatggaagttactaaagcttcactttgttgattcaatgctttctttcactttctaatcatgcaaaagtgtcaacagGGTCGCATAAACACAAGTGGATGGGTCCAGCAATCAGAATGTCTCTTCCAAGCTTCAG
species | Oryza sativa |
transcript | LOC_Os10g35644.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAGGGCTCTTGTACAAGACATTTGTGCAACATTAGTGTACCGCTTACTG GGTCGCATAAACACAAGTGGATGGGTCCAGCAATCAGAATGTCTCTTCCAAEST: gi|29689642|gb|CB685917.1|CB685917
genomic: CAAGGGCTCTTGTACAAGACATTTGTGCAACATTAGTGTACCGCTTACTGgtgagttgaa ... gtgtcaacagGGTCGCATAAACACAAGTGGATGGGTCCAGCAATCAGAATGTCTCTTCCAA
EST: CAAGGGCTCTTGTACAAGACATTTGTGCAACATTAGTGTACCGCTTACTG GGTCGCATAAACACAAGTGGATGGGTCCAGCAAT
genomic: CAAGGGCTCTTGTACAAGACATTTGTGCAACATTAGTGTACCGCTTACTGgtgagttgaa ... gtgtcaacagGGTCGCATAAACACAAGTGGATGGGTCCAGCAAT
actttgttgattcaatgctttctttcactttctaatcatgcaaaagtgtcaacagGGTCGCATAAACACAAGTGGATGGGTCCAGCAATCAGAATGTCTCTTCCAAGCTTCAG
ttctaat putative branch site (score: 4)
tttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgcctaaccttatgtctcaaaaatggaagttactaaagcttcactttgttgattcaatgctttctttcactttctaatcatgcaaaagtgtcaacagGGTCGCATAAACACAAGTGGATGGGTCCAGCAATCAGAATGTCTCTTCCAAGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
-actgcct
- - - - - - - - - ctcaaaa
- - - - - - - - - - - - - - - - - - - - gcttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - tgattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgca