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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttcacaaggctaacagtttatttgcatagatattgtctttcatgctatctaatatccattcttactacgtctaattgaccatctttacagGATTTCCGTTTGCGTGATATCAATGAGTACGCTGAGTGGTATGGTCATGCACATAGGGCACCAGAACTTCAG

Basic information

species Oryza sativa
transcript LOC_Os10g35170.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g35170.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G038848_T02 (Zea mays), 3'ss of exon 6
gtatgcttcacaaggctaacagtttatttgcatagatattgtctttcatgctatctaatatccattcttactacgtctaattgaccatctttacagGATTTCCGTTTGCGTGATATCAATGAGTACGCTGAGTGGTATGGTCATGCACATAGGGCACCAGAACTTCAG
|||||||   ||              | |||| | |   | | |       | |||||  | |  ||| | |  ||  ||       |  |||||||| |||||  | || || ||||||||||| |||||||||||||| ||| | || |||||||| |||||||||
gtatgctctgcag-------------tctgcacacactctatttact----tctctaa-gtacgatctcagt-tgttgaaaaactattgcttacagGACTTCCGACTACGCGACATCAATGAGTATGCTGAGTGGTATGGACATTCCCACAGGGCACCGGAACTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttcatgctatctaatatccattcttactacgtctaattgaccatctttacagGATTTCCGTTTGCGTGATATCAATGAGTACGCTGAGTGGTATGGTCATGCACATAGGGCACCAGAACTTCAG
                                           ccatcttt  CT-rich tract
          tatctaatat  TA-rich tract