1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatggccattgtactgatccttaagcgaagcaccacacaatccatcactcattttaccatctcgccttgacttgcttctgttcttaccaattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGAACTTGCTGGACAATACAGTTGCTCGACCAGATGATTCAACACTTTACAT
species | Oryza sativa |
transcript | LOC_Os10g28640.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAG TCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGAEST: gi|88675818|gb|CI729390.1|CI729390
genomic: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAGgtatggccat ... aattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGA
EST: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAG TCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGAEST: gi|88262561|gb|CI366335.1|CI366335
genomic: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAGgtatggccat ... aattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGA
EST: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAG TCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGAEST: gi|33663122|gb|CF294089.1|CF294089
genomic: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAGgtatggccat ... aattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGA
EST: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAG TCAGGCAACGTGGCAGAAAGCGAACAATGATTGAATGAAAGTTAAGCTGGAEST: gi|88905485|gb|CI712784.1|CI712784
genomic: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAGgtatggccat ... aattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGA
EST: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAG TCAGGCAANGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTACGCTGGAEST: gi|86530471|gb|CI170677.1|CI170677
genomic: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAGgtatggccat ... aattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGA
EST: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAG TCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGAEST: gi|88980055|gb|CI026345.1|CI026345
genomic: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAGgtatggccat ... aattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGA
EST: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAG TCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGAEST: gi|88272277|gb|CI386731.1|CI386731
genomic: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAGgtatggccat ... aattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGA
EST: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAG TCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGAEST: gi|88675599|gb|CI729712.1|CI729712
genomic: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAGgtatggccat ... aattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGA
EST: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCCAG TCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGAEST: gi|88833965|gb|CI077446.1|CI077446
genomic: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAGgtatggccat ... aattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGA
EST: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAG TCAGGCAACGTGGCAGAAAGCGAACAA--ATTGGATGAAAGTTAAGCTGGA
genomic: CAGAAAAGCTTCAAAGCAATGGTGCGCTACTACGAACAAGCTAGCTCAAGgtatggccat ... aattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGA
atcactcattttaccatctcgccttgacttgcttctgttcttaccaattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGAACTTGCTGGACAATACAGTTGCTCGACCAGATGATTCAACACTTTACAT
ttcttac putative branch site (score: 14)
aattttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggccattgtactgatccttaagcgaagcaccacacaatccatcactcattttaccatctcgccttgacttgcttctgttcttaccaattttacagTCAGGCAACGTGGCAGAAAGCGAACAATGATTGGATGAAAGTTAAGCTGGAACTTGCTGGACAATACAGTTGCTCGACCAGATGATTCAACACTTTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG