Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctatccctgttctgctaaatcttctcacatactacaccaatcatgcaatgcctgtaaaaattctcaccgtcagatcaatgacaagattagaatagacaatacctaatatcgacaaatgacgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAGAAGACCCAGGGCGTCGACATCGCGGGTTACGGCTCATCCAAGGTGGTGT

Basic information

species Oryza sativa
transcript LOC_Os10g28200.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g28200.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 6
gtatctatccctgttctgctaaatcttctcacatactacaccaatcatgcaatgcctgtaaaaattctcaccgtcagatcaatgacaagattagaatagacaatacctaatatcgacaaatgacgat--gaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAGAAGACCCAGGGCGTCGACATCGCGGGTTACGGCTCATCCAAGGTGGTGT
                                 ||||    | ||| ||| |     |  | |     || || ||       ||       || | | |||       || |  |||||  ||  |  |  ||||| |||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||  ||||| || |||||||||||||
--------------------------------gtactgtcactatcttgcta-----gatatagcctccatcgccatgctggagatgttgggaggacaaaca------gatgtaaacaaaataccctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA20G36740.3 (Glycine max), 3'ss of exon 5
gtatctatccctgttctgctaaatcttctcacatactacaccaatcatgcaatgcctgtaaaaattctcaccgtca-gatcaatgacaagattagaatagacaatacctaatatcgacaaatgacgatga-acagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAGAAGACCCAGGGCGTCGACATCGCGGGTTACGGCTCATCCAAGGTGGTGT
                        ||| | |  |  |||   | || | |   |  | |     || | | | | |  | ||    |||||||    ||   | ||| ||   |     |||   ||||    |||| || |||||| |||| ||||||||||| ||||||||||| |||||||||||| | || ||  | || ||  | |  || || || ||||| |||||| 
------------------------ctttttagtt--taccttagtctttcccagttttt-----tttttatcttgataaacagcctcaagattc---tatgta-tacttatagtgtctcaattttgatgttgtagGATGGACTGAGGATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCAGTGTATGGGTCTTCCAAAGTGGTGC

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA10G30400.1 (Glycine max), 3'ss of exon 5
gtatctatccctgttctgctaaatcttctcacatactacaccaatcatgcaatgcctgtaaaaattctcaccgtca-gatcaatgacaagattagaatagacaatacctaatatcgacaaatgacgatga-acagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAGAAGACCCAGGGCGTCGACATCGCGGGTTACGGCTCATCCAAGGTGGTGT
                            ||  |   || |||  |  | |  | || ||     || | | | | |  | ||  | |||||||  |  | | | |    | ||||    |||   ||||    |||| ||| ||||  |||| ||||||||||| ||||||||||| |||||||||||| | || ||  | || ||  | |  || || || ||||| |||||| 
--------------------------cttcgtagtttatacc--ttgttctttcccagt-----ttttgatcttgataaacagcgtcaagattctatgaaatacttaacagtatc--tcaattgtgatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCTGTGTATGGGTCTTCCAAAGTGGTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86526086|gb|CI166292.1|CI166292
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|89185237|gb|CI050971.1|CI050971
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|88228192|gb|CI227672.1|CI227672
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|89178503|gb|CI015208.1|CI015208
EST:     AAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: AAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29657347|gb|CB653622.1|CB653622
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29656908|gb|CB653183.1|CB653183
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29663089|gb|CB659364.1|CB659364
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|86494710|gb|CI137343.1|CI137343
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29663824|gb|CB660099.1|CB660099
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29638323|gb|CB643332.1|CB643332
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29638696|gb|CB643705.1|CB643705
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|88228656|gb|CI228136.1|CI228136
EST:     ACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|86853777|gb|CI250028.1|CI250028
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|14571487|gb|BI118855.1|BI118855
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATCGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29663380|gb|CB659655.1|CB659655
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29663825|gb|CB660100.1|CB660100
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|313079521|gb|HO213079.1|HO213079
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATCA-AGAAGGA
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGAT-AGAGAAGGA
EST: gi|86252173|gb|CI055910.1|CI055910
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|86496005|gb|CI138638.1|CI138638
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|88847899|gb|CI006085.1|CI006085
EST:     AAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: AAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|58591287|gb|CF989595.1|CF989595
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|25800810|gb|CA756771.1|CA756771
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATCGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29659321|gb|CB655596.1|CB655596
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29672450|gb|CB668725.1|CB668725
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|33801053|gb|CF326400.1|CF326400
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|9788895|gb|BE530905.1|BE530905
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATCGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29638322|gb|CB643331.1|CB643331
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|58590748|gb|CF989056.1|CF989056
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGG
EST: gi|29656793|gb|CB653068.1|CB653068
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|58680709|gb|CK069396.1|CK069396
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|88250912|gb|CI248763.1|CI248763
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|87010668|gb|CI312360.1|CI312360
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29662150|gb|CB658425.1|CB658425
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29669313|gb|CB665588.1|CB665588
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|86495431|gb|CI138064.1|CI138064
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|88215233|gb|CI215082.1|CI215082
EST:     AGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: AGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29680860|gb|CB677135.1|CB677135
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29668589|gb|CB664864.1|CB664864
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|86858737|gb|CI275016.1|CI275016
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|86846148|gb|CI339768.1|CI339768
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29630035|gb|CB635044.1|CB635044
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATCGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|89185424|gb|CI051752.1|CI051752
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|86505998|gb|CI148631.1|CI148631
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|86544718|gb|CI184924.1|CI184924
EST:     CACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: CACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29676977|gb|CB673252.1|CB673252
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|86500262|gb|CI142895.1|CI142895
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|29688061|gb|CB684336.1|CB684336
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|33658336|gb|CF280949.1|CF280949
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|33654319|gb|CF276933.1|CF276933
EST:     ACCNCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: A-C-CCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|87016591|gb|CI275593.1|CI275593
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
EST: gi|86498722|gb|CI141355.1|CI141355
EST:     ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAG                         GACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG
genomic: ACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 75 (downstream exon)
Score: 86

CATCCACCACATCCCTGGACCCGAGGGTGTCCGTGGCCGTAACTCCGACAACACCCTCATCAAGGAGAAGCTTGGCTGGGCACCCACAATGAAGCTCAAGgtatctatcc ... cgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAGAAGACCCAGGGCGTCGACATCGCGGGTTACGGCTCATCCAAGGTGGTGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatgacaagattagaatagacaatacctaatatcgacaaatgacgatgaacagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAGAAGACCCAGGGCGTCGACATCGCGGGTTACGGCTCATCCAAGGTGGTGT
                          acctaat  putative branch site (score: 86)
           attagaata  TA-rich tract