1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtcatatcattctctctcatttttaacctcaaagcacaaacattatcccacttttcagaagctctaacagcaacctttcattgcagCATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTATGGGACCGAAATATACCAGAAAGAGGCTAGCGGCAACATTCAGAAGCTAGTTTTCAGCAAGGTA
species | Oryza sativa |
transcript | LOC_Os10g26730.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGTTATGTGAATTGTCCTACTGTCCGCCTACA CATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTNTGGGCCCGAAATATCEST: gi|86496291|gb|CI138924.1|CI138924
genomic: TGGTTATGTGAATTGTCCTACTGTCCGCCTACAgtgagtcata ... ttcattgcagCATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTATGGGACCGAAATATA
EST: CCATTGATTAAAAAATATGGTTATGTGAATTGTCCTACTGTCCGCCTACA CATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTATGGGACCGAAATATAEST: gi|27547976|gb|CA766003.2|CA766003
genomic: CCATTGATTAAAAAATATGGTTATGTGAATTGTCCTACTGTCCGCCTACAgtgagtcata ... ttcattgcagCATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTATGGGACCGAAATATA
EST: CCATTGATTAAAAAATATGGGTATGTGAATCGTCCTACTGTCCGNCTACA CATTCCCACTATTGTCAGCGGTGAANCTGCGACCTATGGGAACCGACATATEST: gi|58688769|gb|CK077456.1|CK077456
genomic: CCATTGATTAAAAAATATGGTTATGTGAATTGTCCTACTGTCCGCCTACAgtgagtcata ... ttcattgcagCATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTATGGGA-CCGAAATAT
EST: CATTGATTTAAAAAATATGGTTATGTGAATCGTCCTACTGTCCGCCTACA CATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTATGGAACCGACATATA
genomic: CATTGA-TTAAAAAATATGGTTATGTGAATTGTCCTACTGTCCGCCTACAgtgagtcata ... ttcattgcagCATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTATGGGACCGAAATATA
aagcacaaacattatcccacttttcagaagctctaacagcaacctttcattgcagCATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTATGGGACCGAAATATACCAGAAAGAGGCTAGCGGCAACATTCAGAAGCTAGTTTTCAGCAAGGTA
ctctaac putative branch site (score: 4)
cctttcatt putative PPT
aaacattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcatatcattctctctcatttttaacctcaaagcacaaacattatcccacttttcagaagctctaacagcaacctttcattgcagCATCCCCACTATTGTCAGCGGTGAAGCTGCGACCTATGGGACCGAAATATACCAGAAAGAGGCTAGCGGCAACATTCAGAAGCTAGTTTTCAGCAAGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG