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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtgaataaaaacatgtttttatcttgccaagtcattgcaatttttcggtttacagttctcactgctctttcttctgctgctgtaatagCAAGAGATTGCGGAGGAGCAGCTACTAGCCACTGGGTCAGAAGTCTCCAATCTTTCAAGCACAGAAACTTTGGAAACTAGAACTGATCCAATTAAATTAA

Basic information

species Oryza sativa
transcript LOC_Os10g21890.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29622297|gb|CB627308.1|CB627308
EST:     TCTGGAAGAATCCTTTGTTGCCGAAAGATACCGAGCCGGTAGCTGAAATA                         CAAGAGATTGCGGAGGAGCAGCTACTAGCCACTGGGTCAGAAGTCTCCAAT
genomic: TCTGGAAGAATCCTTTGTTGCCGAAAGATACCGAGCCGGTAGCTGAAATAgtatgttgtg ... gctgtaatagCAAGAGATTGCGGAGGAGCAGCTACTAGCCACTGGGTCAGAAGTCTCCAAT
EST: gi|58654848|gb|CK043528.1|CK043528
EST:     TCTGGAAGAATCCTTTGTTGCCGAAAGATACCGAGCCGGTAGCTGAAATA                         CAAGAGAGGGCGGAGGAGCAGCTACTAGCCACTGGGTCAGAAGTCTCCAAT
genomic: TCTGGAAGAATCCTTTGTTGCCGAAAGATACCGAGCCGGTAGCTGAAATAgtatgttgtg ... gctgtaatagCAAGAGATTGCGGAGGAGCAGCTACTAGCCACTGGGTCAGAAGTCTCCAAT
EST: gi|29622320|gb|CB627331.1|CB627331
EST:     TCTGGAAGAATCCTTTGTTGCCGAAAGATACCGAGCCGGTAGCTGAAATA                         CAAGAGATTGCGGAGGAGCAGCTACTAGCCACTGGGTCAGAAGTCTCCAAT
genomic: TCTGGAAGAATCCTTTGTTGCCGAAAGATACCGAGCCGGTAGCTGAAATAgtatgttgtg ... gctgtaatagCAAGAGATTGCGGAGGAGCAGCTACTAGCCACTGGGTCAGAAGTCTCCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgcaatttttcggtttacagttctcactgctctttcttctgctgctgtaatagCAAGAGATTGCGGAGGAGCAGCTACTAGCCACTGGGTCAGAAGTCTCCAATCTTTCAAGCACAGAAACTTTGGAAACTAGAACTGATCCAATTAAATTAA
                      ttctcac  putative branch site (score: 2)
                               ctctttcttctgctgc  putative PPT
     aattttt  TA-rich tract