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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctgcatgttaagatgtgcaatttattgccctcttatctattcgtttatgaatttgccaactgataatatgttctgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGC

Basic information

species Oryza sativa
transcript LOC_Os10g08550.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g08550.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G048371_T03 (Zea mays), 3'ss of exon 6
----gtttgctgcatgttaagatgtgcaatttattgccctcttatctattcgtttatgaatttgccaactgataatatgttctgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGC
     | |  ||| |  | ||  || |   ||| |    ||   | ||    ||||     ||   || |  | |||| || |  || |||||||||||||||||| ||||| ||||||||  | || ||||| || ||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||
gttcctatcttgctttattagtagtact-cttagtttattcagttttaactatttaatctcttattaattttttatattttgtaatt-gcagCACATTGCCAACCTAGCTGGGAACAAGCAGTTAGTGTTGCCTGTCCCTGCATTCAATGTCATCAACGGTGGTTCCCATGCTGGAAACAAGCTTGCTATGC

upper sequence: LOC_Os10g08550.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA09G28100.1 (Glycine max), 3'ss of exon 6
gtttgctgcatgttaagatgtgcaatttattgccctcttatct---attcgtttatgaatttgccaactgataatatgttctgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGC
       | |||| | | |     | | |  |   |  ||  |   | | || |    ||  | |  ||  |    |||| |  |||  ||||||||||||| || ||||||||||||    ||||  |||| |||||| ||||||| || || || || || |||||||||||||| ||||| || ||||
-------gtatgtgaggtttcagtaataaaagtatttataagtgaaacttgtattctcatg-gtccgcttttgtattgttttaatttttagCACATTGCCAATCTGGCTGGAAACAAGACTTTGGTACTGCCTGTACCTTCATTCAATGTTATCAATGGAGGCTCACATGCTGGAAATAAGCTAGCAATGC

upper sequence: LOC_Os10g08550.3 (Oryza sativa), 3'ss of exon 6
lower sequence: PP1S1_526V6.1 (Physcomitrella patens), 3'ss of exon 6
--------------------------------------------------------------------------------------------------------gtttgctgcatg-ttaagatgtgcaatttattgccctcttatct------attcgtttatgaatttgccaactgataatatgttctgtt-ttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGC
                                                                                                          ||    |||   |  |||||  | |  | |   ||| |||||      | |||| |      | | |  ||||  | | | |   |  || ||||||||||||||||| ||||| |||||| || | ||  |||| || || || |||||||| || ||||||||||| |||||||| |||||||| |||||||
gttagtgtttcctccggagccaatattgcatgtagtggaatccagtacttgaactatttttagttctattgaatttcgcttagtgagctattcttcgtttccataattaaatcataacttggatgtaaagtagagtcgtctcatatcttgaaggaatcgtgttcttgctcgacttctgacgaaaagctggatgatttcagCACATTGCCAACCTGGCTGGCAACAAGGAAATCGTGATGCCAGTGCCCGCTTTCAACGTGATCAACGGTGGATCTCATGCTGGCAACAAGCTCGCCATGC

upper sequence: LOC_Os10g08550.3 (Oryza sativa), 3'ss of exon 6
lower sequence: PP1S1_527V6.1 (Physcomitrella patens), 3'ss of exon 6
--------------------------------------gtttgct-gcatgttaagatgtgcaatttattgccctcttatctattcgtttatgaatttgccaactgataatatgttctgttt-tgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGC
                                      |  | |  |  |      |   |   | | |||  |  |   | |||    |      ||| |  ||||    | |||  || |   ||||||||||||||||| ||||| |||||| || | ||  |||| || ||||| |||||||| || || |||||||| |||||||| |||||||| |||||||
gttagctctttctcctccttgatttaatttctctccgcgcctaccagtgttgctcaagcagttttgtcttgaacgttagacaatttaaatccttggttgacttctgacggcaagttgggtgtactcagCACATTGCCAACCTGGCTGGCAACAAGGAAATTGTGATGCCAGTGCCTGCCTTCAACGTGATCAATGGTGGATCTCATGCTGGCAACAAGCTCGCCATGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|428372|gb|D24520.1|D24520
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|117224917|gb|CT845976.1|CT845976
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29688336|gb|CB684611.1|CB684611
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58687518|gb|CK076205.1|CK076205
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58607766|gb|CK035799.1|CK035799
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58604220|gb|CK014748.1|CK014748
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|33676058|gb|CF304297.1|CF304297
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|33675547|gb|CF303786.1|CF303786
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29656140|gb|CB652415.1|CB652415
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29678862|gb|CB675137.1|CB675137
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|33654264|gb|CF276878.1|CF276878
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGG
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGG
EST: gi|58597291|gb|CK007819.1|CK007819
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58687904|gb|CK076591.1|CK076591
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|33674962|gb|CF303201.1|CF303201
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|427989|gb|D24135.1|D24135
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29644081|gb|CB649088.1|CB649088
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29665470|gb|CB661745.1|CB661745
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29679887|gb|CB676162.1|CB676162
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|53553401|gb|CO436313.1|CO436313
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58607610|gb|CK035643.1|CK035643
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGNCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58695790|gb|CK084477.1|CK084477
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|25797541|gb|CA753502.1|CA753502
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|428358|gb|D24506.1|D24506
EST:     GCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: GCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58680700|gb|CK069387.1|CK069387
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58679935|gb|CK068622.1|CK068622
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|23513780|gb|BU673306.1|BU673306
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29619828|gb|CB624840.1|CB624840
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|86829589|gb|CI286771.1|CI286771
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29657924|gb|CB654199.1|CB654199
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58684785|gb|CK073472.1|CK073472
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29668022|gb|CB664297.1|CB664297
EST:     TGGCCATTTTCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58588647|gb|CF986955.1|CF986955
EST:     TGGCCATTTGCAAAGGGGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58659715|gb|CK048395.1|CK048395
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58662698|gb|CK051384.1|CK051384
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58598780|gb|CK009308.1|CK009308
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|33676198|gb|CF304437.1|CF304437
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|33658241|gb|CF280855.1|CF280855
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACA-GCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|30228895|gb|CB966786.1|CB966786
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29668592|gb|CB664867.1|CB664867
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58652680|gb|CK041360.1|CK041360
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58677316|gb|CK066003.1|CK066003
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29681677|gb|CB677952.1|CB677952
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|163920149|gb|EG712055.1|EG712055
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58686932|gb|CK075619.1|CK075619
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58694276|gb|CK082963.1|CK082963
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|30229421|gb|CB967312.1|CB967312
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58671253|gb|CK059939.1|CK059939
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|33694012|gb|CF322251.1|CF322251
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29632935|gb|CB637944.1|CB637944
EST:     TGGCCATCTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAA
EST: gi|58673278|gb|CK061964.1|CK061964
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58683046|gb|CK071733.1|CK071733
EST:     AGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: AGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|33676308|gb|CF304547.1|CF304547
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58678024|gb|CK066711.1|CK066711
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|325494282|gb|JG458806.1|JG458806
EST:     ATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCTGTACCTGCA
genomic: ATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58681144|gb|CK069831.1|CK069831
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|33657053|gb|CF279667.1|CF279667
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACAGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29659230|gb|CB655505.1|CB655505
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58678619|gb|CK067306.1|CK067306
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29682743|gb|CB679018.1|CB679018
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58693505|gb|CK082192.1|CK082192
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29677116|gb|CB673391.1|CB673391
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58594872|gb|CF993180.1|CF993180
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGA
EST: gi|29679137|gb|CB675412.1|CB675412
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|27554031|gb|CA997931.1|CA997931
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58658241|gb|CK046921.1|CK046921
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|33678253|gb|CF306492.1|CF306492
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACA-GCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29668244|gb|CB664519.1|CB664519
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58673545|gb|CK062231.1|CK062231
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58603616|gb|CK014144.1|CK014144
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29678678|gb|CB674953.1|CB674953
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|6507603|gb|AU064355.2|AU064355
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTT
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTT
EST: gi|29623734|gb|CB628745.1|CB628745
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|218504551|gb|FG952364.1|FG952364
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|33676730|gb|CF304969.1|CF304969
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29639493|gb|CB644502.1|CB644502
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|56158399|gb|AU076022.2|AU076022
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCNCAAACTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGC
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGC-CAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGC
EST: gi|218483031|gb|FG953128.1|FG953128
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29629934|gb|CB634943.1|CB634943
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29667979|gb|CB664254.1|CB664254
EST:     TGGCCATTTTCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58603220|gb|CK013748.1|CK013748
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|5003018|gb|AU068127.1|AU068127
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58660355|gb|CK049035.1|CK049035
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTT
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTT
EST: gi|33793332|gb|CF322547.1|CF322547
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58689374|gb|CK078061.1|CK078061
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29656696|gb|CB652971.1|CB652971
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58662604|gb|CK051290.1|CK051290
EST:     GCTATCATCAAGAAGATTCCTCTGTACCAG                         CACACTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: GCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29664966|gb|CB661241.1|CB661241
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58595622|gb|CK006150.1|CK006150
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|88361405|gb|CI605186.1|CI605186
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCCGTACCTGC
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCC-GTACCTGC
EST: gi|58594060|gb|CF992368.1|CF992368
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCCGTACCTGC
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCC-GTACCTGC
EST: gi|58673211|gb|CK061897.1|CK061897
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58695389|gb|CK084076.1|CK084076
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTT
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTT
EST: gi|58603025|gb|CK013553.1|CK013553
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29659075|gb|CB655350.1|CB655350
EST:     GCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: GCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58663601|gb|CK052287.1|CK052287
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|29684326|gb|CB680601.1|CB680601
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58671394|gb|CK060080.1|CK060080
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTT
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTT
EST: gi|58686722|gb|CK075409.1|CK075409
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
EST: gi|58690568|gb|CK079255.1|CK079255
EST:     TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAG                         CACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA
genomic: TGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 468

CTTGGTGCTAATGCAATCCTGGCTGTGTCACTGGCCATTTGCAAAGCTGGAGCTATCATCAAGAAGATTCCTCTGTACCAGgtttgctgca ... tgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcttatctattcgtttatgaatttgccaactgataatatgttctgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGC
                             aactgat  putative branch site (score: 468)
                                          ttctgtttt  putative PPT
               tttatgaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgctgcatgttaagatgtgcaatttattgccctcttatctattcgtttatgaatttgccaactgataatatgttctgttttgcagCACATTGCCAACCTTGCTGGAAACAAGCAACTGGTTTTGCCCGTACCTGCATTCAACGTCATTAACGGTGGATCACATGCTGGAAACAAGCTTGCCATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT