1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgattttatgggacctttgcagttaccaccactactctgtatattagtaacttcgaaatatggttgattagaaataatcttgtgctaactgaatcacagGGCAAGTGCTGGAAGTATCCATGGCCAAGCCATTGGGAGACAAGAAGCCTGATCACTCGTTCAAGCCTGGAGGAGCTCCAAATTTTCCTCTTCCTCCTTA
species | Oryza sativa |
transcript | LOC_Os10g06130.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGCGAAAAGTATGAAATTGATG GGCAAGTGCTGGAAGTATCCATGGCCAAGCCATTGGGAGACAAGAAGCCTGEST: gi|29663247|gb|CB659522.1|CB659522
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGCGAAAAGTATGAAATTGATGgtaatgtttt ... tgaatcacagGGCAAGTGCTGGAAGTATCCATGGCCAAGCCATTGGGAGACAAGAAGCCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGCGAAAAGTATGAAATTGATG GGCAAGTGCTGGAAGTATCCATGGCCAAGCCATTGGGAGACAAGAAGCCTGEST: gi|33808240|gb|CF330009.1|CF330009
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGCGAAAAGTATGAAATTGATGgtaatgtttt ... tgaatcacagGGCAAGTGCTGGAAGTATCCATGGCCAAGCCATTGGGAGACAAGAAGCCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGCGAAAAGTATGAAATTGATG GGCAAGTGCTGGAAGTATCCATGGCCAAGCCATTGGGAGACAAGAAGCCTGEST: gi|33808242|gb|CF330010.1|CF330010
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGCGAAAAGTATGAAATTGATGgtaatgtttt ... tgaatcacagGGCAAGTGCTGGAAGTATCCATGGCCAAGCCATTGGGAGACAAGAAGCCTG
EST: AGTTAAAGGAAGCGAAAAGTATGAAATTGATG GGCAAGTGCTGGAAGTATCCATGGCCAAGCCATTGGGAGACAAGAAGCCTG
genomic: AGTTAAAGGAAGCGAAAAGTATGAAATTGATGgtaatgtttt ... tgaatcacagGGCAAGTGCTGGAAGTATCCATGGCCAAGCCATTGGGAGACAAGAAGCCTG
tagtaacttcgaaatatggttgattagaaataatcttgtgctaactgaatcacagGGCAAGTGCTGGAAGTATCCATGGCCAAGCCATTGGGAGACAAGAAGCCTGATCACTCGTTCAAGCCTGGAGGAGCTCCAAATTTTCCTCTTCCTCCTTA
tgctaac putative branch site (score: 54)
ttgattagaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgattttatgggacctttgcagttaccaccactactctgtatattagtaacttcgaaatatggttgattagaaataatcttgtgctaactgaatcacagGGCAAGTGCTGGAAGTATCCATGGCCAAGCCATTGGGAGACAAGAAGCCTGATCACTCGTTCAAGCCTGGAGGAGCTCCAAATTTTCCTCTTCCTCCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - -ctttgca
- - - - - - - - - - - - - ccaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtgc