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gtgttatatctgtgatctgatatcttatctattttcacttcatatctgatatcttatcttgttctccatcgtgacaaataatgtactttgcagTGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTATCCAAGGCTAGAGAAGATGTGTATGATTGCAAGGCGGTTACTCAGAGACTTAGAGCTATGCTT
species | Oryza sativa |
transcript | LOC_Os09g36190.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCCAGAGGGCTGTTGGAGAGGCTACTGCTGATTCTGACCTTCATCATAG TGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTATCCAAGGCTAGAGAEST: gi|29628540|gb|CB633551.1|CB633551
genomic: AGCCAGAGGGCTGTTGGAGAGGCTACTGCTGATTCTGACCTTCATCATAGgtgttatatc ... tactttgcagTGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTATCCAAGGCTAGAGA
EST: AGCCAGAGGGCTGTTGGAGAGGCTACTGCTGATTCTGACCTTCATCATAG TGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTAEST: gi|25801297|gb|CA757258.1|CA757258
genomic: AGCCAGAGGGCTGTTGGAGAGGCTACTGCTGATTCTGACCTTCATCATAGgtgttatatc ... tactttgcagTGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTA
EST: AGCCAGAGGGCTGTTGGAGAGGCTACTGCTGATTCTGACCTTCATCATAG TGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTATCCAAGGCTAGAGAEST: gi|29682192|gb|CB678467.1|CB678467
genomic: AGCCAGAGGGCTGTTGGAGAGGCTACTGCTGATTCTGACCTTCATCATAGgtgttatatc ... tactttgcagTGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTATCCAAGGCTAGAGA
EST: AGCCAGAGGGCTGTTGGAGAGGCTACTGCTGATTCTGACCTTCATCATAG TGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTATCCAAGGCTAGAGA
genomic: AGCCAGAGGGCTGTTGGAGAGGCTACTGCTGATTCTGACCTTCATCATAGgtgttatatc ... tactttgcagTGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTATCCAAGGCTAGAGA
ttcatatctgatatcttatcttgttctccatcgtgacaaataatgtactttgcagTGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTATCCAAGGCTAGAGAAGATGTGTATGATTGCAAGGCGGTTACTCAGAGACTTAGAGCTATGCTT
atctgat putative branch site (score: 31)
aaataatgtacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttatatctgtgatctgatatcttatctattttcacttcatatctgatatcttatcttgttctccatcgtgacaaataatgtactttgcagTGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTATCCAAGGCTAGAGAAGATGTGTATGATTGCAAGGCGGTTACTCAGAGACTTAGAGCTATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT