1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgtgtacacccaccaaattgtccttgtgagaataactttttagtcatttcttacttaccctttatatttgtcttcagTGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCTCTCTGGTTTGATTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAA
species | Oryza sativa |
transcript | LOC_Os09g34910.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCG TGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCTEST: gi|218497043|gb|FG966022.1|FG966022
genomic: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCGgtgtgtacac ... ttgtcttcagTGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCT
EST: CGTGCTGCA-GGGCTCAAGTTATTCCAGACATCATT-GATGCTATAGCCG TGGAGGCCGGACCATTATCTTTACCGAGACAAEST: gi|88695020|gb|CI739058.1|CI739058
genomic: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCGgtgtgtacac ... ttgtcttcagTGGAGGCCGGACCATTATCTTTACCGAGACAA
EST: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCG TGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCTEST: gi|29679593|gb|CB675868.1|CB675868
genomic: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCGgtgtgtacac ... ttgtcttcagTGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCT
EST: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCG TGGAGGCCGGACCAT-ATCTTTACEST: gi|88336930|gb|CI627010.1|CI627010
genomic: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCGgtgtgtacac ... ttgtcttcagTGGAGGCCGGACCATTATCTTTAC
EST: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCG TGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCTEST: gi|29628388|gb|CB633399.1|CB633399
genomic: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCGgtgtgtacac ... ttgtcttcagTGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCT
EST: GTGCTGCAAGGGGCTCA-GTTATTCCAGACATCATCCGATGCTATAGCCG TGGAGGCCGGACCATTATCTTTACCEST: gi|25802299|gb|CA758260.1|CA758260
genomic: GTGCTGCAAGGG-CTCAAGTTATTCCAGACATCATCCGATGCTATAGCCGgtgtgtacac ... ttgtcttcagTGGAGGCCGGACCATTATCTTTACC
EST: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCG TGGAGGCCGGACCATTATCTTTACCGAGACANAAGAATCTGCATCAGACCTEST: gi|29637932|gb|CB642941.1|CB642941
genomic: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCGgtgtgtacac ... ttgtcttcagTGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCT
EST: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCG TGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCTEST: gi|58691703|gb|CK080390.1|CK080390
genomic: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCGgtgtgtacac ... ttgtcttcagTGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCT
EST: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCG TGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCT
genomic: CGTGCTGCAAGGGCTCAAGTTATTCCAGACATCATCCGATGCTATAGCCGgtgtgtacac ... ttgtcttcagTGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCT
cttgtgagaataactttttagtcatttcttacttaccctttatatttgtcttcagTGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCTCTCTGGTTTGATTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAA
tacttac putative branch site (score: 87)
tttgtcttc putative PPT
agaataacttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtacacccaccaaattgtccttgtgagaataactttttagtcatttcttacttaccctttatatttgtcttcagTGGAGGCCGGACCATTATCTTTACCGAGACAAAAGAATCTGCATCAGACCTCTCTGGTTTGATTGCTGGATCACGTGCCTTGCATGGTGATGTTGCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA