1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtgccctttctagaggagagttagtttatttgtttatttatttatatatttattttccctcaactctgttttctctaaaggacattttttttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCAACTGATATTTACTCGCGCACTTCACATGAAATCTGTATATATCATACC
species | Oryza sativa |
transcript | LOC_Os09g33520.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTTAGAGTT-TCTTTCCTCAAAGACACTCAGATGCAGATGAAGGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGEST: gi|88446797|gb|CI526630.1|CI526630
genomic: TGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGG-CGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAG
EST: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|88251177|gb|CI349407.1|CI349407
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|88253435|gb|CI352061.1|CI352061
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|88276039|gb|CI396643.1|CI396643
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|4879921|gb|AU064220.1|AU064220
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAG CTGCGGGTCGAGCACGACTTNCCTGCTGATCCCAAGTACTTNGACATAAGCEST: gi|88991537|gb|CI019715.1|CI019715
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|88462813|gb|CI519725.1|CI519725
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|88261204|gb|CI364780.1|CI364780
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|88515446|gb|CI443100.1|CI443100
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|86851930|gb|CI316499.1|CI316499
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATGTTAGAGTTTTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|88260809|gb|CI361397.1|CI361397
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATGTTAGAGTTTTCTTTCCTCAAAGACACTCAGATGCGGATGAAGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCEST: gi|88260407|gb|CI362700.1|CI362700
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
EST: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAG CTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
genomic: ATGTTAGAGTTGTCTTTCCTCAAAGACACTCAGATGCAGATGAAGGCGAGgtatgcagcc ... ttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGC
atatttattttccctcaactctgttttctctaaaggacattttttttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCAACTGATATTTACTCGCGCACTTCACATGAAATCTGTATATATCATACC
ctctaaa putative branch site (score: 11)
cattttttttccctgc putative PPT
acatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccctttctagaggagagttagtttatttgtttatttatttatatatttattttccctcaactctgttttctctaaaggacattttttttccctgcagCTGCGGGTCGAGCACGACTTCCCTGCTGATCCCAAGTACTTCGACATAAGCAACTGATATTTACTCGCGCACTTCACATGAAATCTGTATATATCATACC
-tgccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaggaca