1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtgatctgaaatgaaagcctttgatgttagtcttgctggcttgctgcttttgtagctggtattgtttaacctgatcaacttatgcttgtagGCCAGAAGAATTGATATGCTTTTTGTAATTGGTGGAAACGGTAGCCATGCAGGAGCTAATGCTATCCATGAGGAG
species | Oryza sativa |
transcript | LOC_Os09g24910.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGTGTCTCGTGGAGGAGCTAAAACTAGTGAGATCGTCGATAGTATACAA GCCAGAAGAATTGATATGCTTTTTGTAATTGGTGGAAACGGTAGCCATGCAEST: gi|58661054|gb|CK049734.1|CK049734
genomic: GTGTGTCTCGTGGAGGAGCTAAAACTAGTGAGATCGTCGATAGTATACAAgtaagtgatc ... atgcttgtagGCCAGAAGAATTGATATGCTTTTTGTAATTGGTGGAAACGGTAGCCATGCA
EST: GTGTGTGTCGTGGAGGAGCTAAAACTAGTGAGATCGTCGATAGTATACAA GCCAGAAGAATTGATATGCTTTTTGTAATTGGTGGAAACGGTAGCCATGCG
genomic: GTGTGTCTCGTGGAGGAGCTAAAACTAGTGAGATCGTCGATAGTATACAAgtaagtgatc ... atgcttgtagGCCAGAAGAATTGATATGCTTTTTGTAATTGGTGGAAACGGTAGCCATGCA
tggcttgctgcttttgtagctggtattgtttaacctgatcaacttatgcttgtagGCCAGAAGAATTGATATGCTTTTTGTAATTGGTGGAAACGGTAGCCATGCAGGAGCTAATGCTATCCATGAGGAG
tattgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgatctgaaatgaaagcctttgatgttagtcttgctggcttgctgcttttgtagctggtattgtttaacctgatcaacttatgcttgtagGCCAGAAGAATTGATATGCTTTTTGTAATTGGTGGAAACGGTAGCCATGCAGGAGCTAATGCTATCCATGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG