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...aatcgtatgtagtattctacagaaaatgcatgttgactcaaactttagattgcagatatttttggctgcaacactaatatccttgtctgctttaatgtagGGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCAGCCAATCCTACCCAGGCTTCACAGGCAACTCAACCAGCAGCTCCATCAA
species | Oryza sativa |
transcript | LOC_Os09g24200.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCTGGTACTCT GGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCEST: gi|58686007|gb|CK074694.1|CK074694
genomic: AAGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCTG-TACTCTgtaagaacat ... tttaatgtagGGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCC
EST: AGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCTNNGTACTCT GGTGTTCCTGAAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCEST: gi|58665783|gb|CK054469.1|CK054469
genomic: AGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCT--GTACTCTgtaagaacat ... tttaatgtagGGTGTTCCTGA-GCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGC
EST: TAAGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCTGTACTCT GGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCAEST: gi|29678389|gb|CB674664.1|CB674664
genomic: TAAGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCTGTACTCTgtaagaacat ... tttaatgtagGGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCA
EST: TAAGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCTGTACTCT GGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCA
genomic: TAAGCGCTGCATTCAACAACCCGGAGAGGGCTGTTGAATATCTGTACTCTgtaagaacat ... tttaatgtagGGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCA
tagattgcagatatttttggctgcaacactaatatccttgtctgctttaatgtagGGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCAGCCAATCCTACCCAGGCTTCACAGGCAACTCAACCAGCAGCTCCATCAA
tccttgtctgcttt CT-rich tract
agatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcgtatgtagtattctacagaaaatgcatgttgactcaaactttagattgcagatatttttggctgcaacactaatatccttgtctgctttaatgtagGGTGTTCCTGAGCAGATGGACATTCCAGTTCCACCTCCGAGTATACAGCCAGCCAATCCTACCCAGGCTTCACAGGCAACTCAACCAGCAGCTCCATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC