1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaatattcttatcctgttccatatccatttttcaccaacctatactgagattatgtacttccacatgtcatttcctgattctacctcaagtttctccctcgctattttccccattacaccatactatgttttgttcctgtacagCTTCTGCGGATCGAAATGGAGCTAGGCAATGTGCGCTATGCTGGGGAGGCATTCAGGTCTCCCTAAGAAACATACATACCACACAACATTCGGAAAGAGT
species | Oryza sativa |
transcript | LOC_Os09g20820.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAAAACTGGTGCTCCATGCCGTAGCGAGAGACTGGCAAAGTACAATCAG CTTCTGCGGATCGEST: gi|88419899|gb|CI516348.1|CI516348
genomic: TCAAAACTGGTGCTCCATGCCGTAGCGAGAGACTGGCAAAGTACAATCAGgtaaatattc ... tcctgtacagCTTCTGCGGATCG
EST: TCAAAACTGGTGCTCCATGCCGTAGCGAGAGACTGGCAAAGTACAATCAG CTTCTGCGGATCGAAATGGAGCTAGGCAATGTGCGCTATGCTGGGGAGGCAEST: gi|88234890|gb|CI232741.1|CI232741
genomic: TCAAAACTGGTGCTCCATGCCGTAGCGAGAGACTGGCAAAGTACAATCAGgtaaatattc ... tcctgtacagCTTCTGCGGATCGAAATGGAGCTAGGCAATGTGCGCTATGCTGGGGAGGCA
EST: TCAAAACTGGTGCTCCATGCCGTAGCGAGAGACTGGCAAAGTACAATCAG CTTCTGCGGATCGAAATGGAGCTAGGCAATGTGCGCTATGCTGGGGAGGCAEST: gi|88249547|gb|CI249396.1|CI249396
genomic: TCAAAACTGGTGCTCCATGCCGTAGCGAGAGACTGGCAAAGTACAATCAGgtaaatattc ... tcctgtacagCTTCTGCGGATCGAAATGGAGCTAGGCAATGTGCGCTATGCTGGGGAGGCA
EST: TCAAAACTGGTGCTCCATGCCGTAGCGAGAGACTGGCAAAGTACAATCAG CTTCTGCGGATCGAAATGGAGCTAGGCAATGTGCGCTATGCTGGGGAGGCA
genomic: TCAAAACTGGTGCTCCATGCCGTAGCGAGAGACTGGCAAAGTACAATCAGgtaaatattc ... tcctgtacagCTTCTGCGGATCGAAATGGAGCTAGGCAATGTGCGCTATGCTGGGGAGGCA
gtttctccctcgctattttccccattacaccatactatgttttgttcctgtacagCTTCTGCGGATCGAAATGGAGCTAGGCAATGTGCGCTATGCTGGGGAGGCATTCAGGTCTCCCTAAGAAACATACATACCACACAACATTCGGAAAGAGT
ttttgttcct CT-rich tract
tatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatattcttatcctgttccatatccatttttcaccaacctatactgagattatgtacttccacatgtcatttcctgattctacctcaagtttctccctcgctattttccccattacaccatactatgttttgttcctgtacagCTTCTGCGGATCGAAATGGAGCTAGGCAATGTGCGCTATGCTGGGGAGGCATTCAGGTCTCCCTAAGAAACATACATACCACACAACATTCGGAAAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA