1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagcaccttgatatttaattatagacaaattgctccttacatattgtttggtgcaatttttgactattttctttcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAG
species | Oryza sativa |
transcript | LOC_Os09g12600.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTCAAAGNTCACTCCGACAGTTCTGCAGTCTGGCT GGTCTGAACTTAAAAACAGATATACACAA-GTCACTGATTGCTGCGTTCTEST: gi|27577402|gb|CB000097.1|CB000097
genomic: GTCAAAG-TCACTCCGACAGTTCTGCAGTCT-GCTgtgagcacct ... tcttatgtagGGTCTGAACTT-AAAACAGATATACACAAGGTCACTGATTGCTGCGTTCT
EST: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCT GGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTEST: gi|163923308|gb|EG709363.1|EG709363
genomic: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCTgtgagcacct ... tcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
EST: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCT GGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTEST: gi|58680478|gb|CK069165.1|CK069165
genomic: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCTgtgagcacct ... tcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
EST: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCT GGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTEST: gi|218492959|gb|FG966646.1|FG966646
genomic: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCTgtgagcacct ... tcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
EST: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCT GGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTEST: gi|86828012|gb|CI274919.1|CI274919
genomic: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCTgtgagcacct ... tcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
EST: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCT GGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTEST: gi|86499468|gb|CI142101.1|CI142101
genomic: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCTgtgagcacct ... tcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
EST: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCT GGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTEST: gi|33675431|gb|CF303670.1|CF303670
genomic: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCTgtgagcacct ... tcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
EST: GACAGTTCTGCAGTCTGCT GGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTEST: gi|86498395|gb|CI141028.1|CI141028
genomic: GACAGTTCTGCAGTCTGCTgtgagcacct ... tcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
EST: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCT GGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTEST: gi|163929491|gb|EG709282.1|EG709282
genomic: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCTgtgagcacct ... tcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
EST: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCT GGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTEST: gi|58668471|gb|CK057157.1|CK057157
genomic: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCTgtgagcacct ... tcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
EST: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCT GGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTEST: gi|27577441|gb|CB000136.1|CB000136
genomic: CCTTGCTAACAGAGGGTGTCAAAGTCACTCCGACAGTTCTGCAGTCTGCTgtgagcacct ... tcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
EST: CAAAGTCACTCCGACAGTTCTGCAGTCTGCT GGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
genomic: CAAAGTCACTCCGACAGTTCTGCAGTCTGCTgtgagcacct ... tcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGT
attgctccttacatattgtttggtgcaatttttgactattttctttcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAG
tttttgactattttct CT-rich tract
aatttttgactatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaccttgatatttaattatagacaaattgctccttacatattgtttggtgcaatttttgactattttctttcttatgtagGGTCTGAACTTAAAACAGATATACACAAGGTCACTGATTGCTGCGTTCTGTTTCCATGCATACCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC