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...ttagcccatgtaggtagttgtagggcattatcaaatttaatggcgtcaaaaactcatgtgtttcttgttatctcaatgtaacatagtatgtttatcatagACTTGCAGCAAAAGGATTCACTTTCTTGCCCTCCATCTCTTCAATGGACAAGTGATGGCCTTGAAAAGGACCTGCATATTCAGTTAAATTCAGTTACTGT
species | Oryza sativa |
transcript | LOC_Os09g09360.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGTGTTAAGCCTCCAGATCTGATTGCAAGTGGTAACAAGGAAGCTAGTG ACTTGCAGCAAAAGGATTCACTTTCTTGCCCTCCATCTCTTCAATGGACAAEST: gi|29631519|gb|CB636528.1|CB636528
genomic: AGGTGTTAAGCCTCCAAATCTGATTGCAAGTGGTAACAAGGAAGCTAGTGgtacggctcg ... tttatcatagACTTGCAGCAAAAGGATTCACTTTCTTGCCCTCCATCTCTTCAATGGACAA
EST: AGGTGTTAAGCCTCCAAATCTGATTGCAAGTGGTAACAAGGAAGCTAGTG ACTTGCAGCAAAAGGATTCACTTTCTTGCCCTACATCTCTTCAATGGACAAEST: gi|29631082|gb|CB636091.1|CB636091
genomic: AGGTGTTAAGCCTCCAAATCTGATTGCAAGTGGTAACAAGGAAGCTAGTGgtacggctcg ... tttatcatagACTTGCAGCAAAAGGATTCACTTTCTTGCCCTCCATCTCTTCAATGGACAA
EST: AGGTGTTAAGCCTCCAAATCTGATTGCAAGTGGTAACAAGGAAGCTAGTG ACTTGCAGCAAAAGGATTCACTTTCTTGCCCTCCATCTCTTCAATGGACAA
genomic: AGGTGTTAAGCCTCCAAATCTGATTGCAAGTGGTAACAAGGAAGCTAGTGgtacggctcg ... tttatcatagACTTGCAGCAAAAGGATTCACTTTCTTGCCCTCCATCTCTTCAATGGACAA
tcaaaaactcatgtgtttcttgttatctcaatgtaacatagtatgtttatcatagACTTGCAGCAAAAGGATTCACTTTCTTGCCCTCCATCTCTTCAATGGACAAGTGATGGCCTTGAAAAGGACCTGCATATTCAGTTAAATTCAGTTACTGT
atgtaac putative branch site (score: 14)
tatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagcccatgtaggtagttgtagggcattatcaaatttaatggcgtcaaaaactcatgtgtttcttgttatctcaatgtaacatagtatgtttatcatagACTTGCAGCAAAAGGATTCACTTTCTTGCCCTCCATCTCTTCAATGGACAAGTGATGGCCTTGAAAAGGACCTGCATATTCAGTTAAATTCAGTTACTGT
- - -ccatgta
- - - - - - - - - - - - - - - - - - - - - - - caaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtg