Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcctaattatattgatgctcagcatttttttttctacgagtttacacacacctcattttttatccatcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCATGCG

Basic information

species Oryza sativa
transcript LOC_Os08g44770.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g44770.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G106928_T01 (Zea mays), 3'ss of exon 6
gtatgcctaattatattgatgctcagcatttttttttctacgagtttacacacacctcattt---tttatccatcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCATGCG
||  |||||||| || |   | ||  |||||| ||  |||     |   |  |  | | |||   |||   ||||   |||||| ||||||||||| || |||  ||||||||||||||||||  |||| ||||| |
gtgagcctaattctactcgcgttccacattttcttg-ctattcagtagtatgctgcccttttaactttgctcatcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCATGTG

upper sequence: LOC_Os08g44770.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G106928_T02 (Zea mays), 3'ss of exon 6
gtatgcctaattatattgatgctcagcatttttttttctacgagtttacacacacctcattt---tttatccatcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCATGCG----------------------------------------------
||  |||||||| || |   | ||  |||||| ||  |||     |   |  |  | | |||   |||   ||||   |||||| ||||||||||| || |||  ||||||||||||||||||  |||| ||||| |                                              
gtgagcctaattctactcgcgttccacattttcttg-ctattcagtagtatgctgcccttttaactttgctcatcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCATGTGGTATGTTCATTTTGCTATATTTATGGTGAACCGTTGAATGTGACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86506140|gb|CI148773.1|CI148773
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86513004|gb|CI155637.1|CI155637
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86508198|gb|CI150831.1|CI150831
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86421225|gb|CI057214.1|CI057214
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88839545|gb|CI005333.1|CI005333
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86534109|gb|CI174315.1|CI174315
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86889161|gb|CI315772.1|CI315772
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTATTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86864469|gb|CI334166.1|CI334166
EST:     CATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: CATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86834311|gb|CI344071.1|CI344071
EST:     TGTTGGGAGAGCATTCGTTGTTCGTGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86528723|gb|CI168929.1|CI168929
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|87015771|gb|CI277729.1|CI277729
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88985036|gb|CI011891.1|CI011891
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88845738|gb|CI008735.1|CI008735
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|89161504|gb|CI099476.1|CI099476
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|87011952|gb|CI283839.1|CI283839
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88208570|gb|CI208419.1|CI208419
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88980612|gb|CI026674.1|CI026674
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88996089|gb|CI037380.1|CI037380
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|218498098|gb|FG967282.1|FG967282
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|89163341|gb|CI100231.1|CI100231
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86529872|gb|CI170078.1|CI170078
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86504300|gb|CI146933.1|CI146933
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88216068|gb|CI215917.1|CI215917
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86510525|gb|CI153158.1|CI153158
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88987550|gb|CI034464.1|CI034464
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86544571|gb|CI184777.1|CI184777
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86511754|gb|CI154387.1|CI154387
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88975422|gb|CI023673.1|CI023673
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88223278|gb|CI223127.1|CI223127
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88983420|gb|CI028656.1|CI028656
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|89197874|gb|CI013864.1|CI013864
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86425026|gb|CI070123.1|CI070123
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88204781|gb|CI204630.1|CI204630
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88975345|gb|CI023596.1|CI023596
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86479222|gb|CI121855.1|CI121855
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86593056|gb|CI255518.1|CI255518
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGCCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88221590|gb|CI221546.1|CI221546
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|33805978|gb|CF328868.1|CF328868
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTAGTGGGCGACTTG-AT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86528780|gb|CI168986.1|CI168986
EST:     TATTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|89163339|gb|CI100229.1|CI100229
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86420964|gb|CI056953.1|CI056953
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88836667|gb|CI010923.1|CI010923
EST:     TGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATAATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86528134|gb|CI168340.1|CI168340
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|94362563|gb|CI052682.1|CI052682
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88202104|gb|CI202459.1|CI202459
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|40486867|gb|BX898179.1|BX898179
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88904537|gb|CI012911.1|CI012911
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88977576|gb|CI025312.1|CI025312
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88987807|gb|CI017896.1|CI017896
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86527878|gb|CI168084.1|CI168084
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88835465|gb|CI005155.1|CI005155
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86418762|gb|CI053563.1|CI053563
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86508677|gb|CI151310.1|CI151310
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86526897|gb|CI167103.1|CI167103
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|89170154|gb|CI039431.1|CI039431
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88975959|gb|CI024210.1|CI024210
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|89169247|gb|CI038754.1|CI038754
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|89178504|gb|CI015209.1|CI015209
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|89178593|gb|CI015298.1|CI015298
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88991730|gb|CI034868.1|CI034868
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88217696|gb|CI217545.1|CI217545
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86416925|gb|CI030936.1|CI030936
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88835396|gb|CI005086.1|CI005086
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|89187924|gb|CI009908.1|CI009908
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86512030|gb|CI154663.1|CI154663
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|38475413|gb|CF959546.1|CF959546
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGAGTGGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|89187021|gb|CI053424.1|CI053424
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|33805976|gb|CF328867.1|CF328867
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTAGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88256889|gb|CI354670.1|CI354670
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|87033246|gb|CI187870.1|CI187870
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88975836|gb|CI024087.1|CI024087
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88214858|gb|CI212896.1|CI212896
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|88366020|gb|CI548267.1|CI548267
EST:     TCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86261178|gb|CI004743.1|CI004743
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
EST: gi|86533041|gb|CI173247.1|CI173247
EST:     TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGG                         GTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT
genomic: TGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaa ... tcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatttttttttctacgagtttacacacacctcattttttatccatcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCATGCG
                                             tcactttt  CT-rich tract
                               tcattttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcctaattatattgatgctcagcatttttttttctacgagtttacacacacctcattttttatccatcacttttagGTGGCCATGAGCTTAGTCTCAGTACTGGAAATGCTGGTGGGCGACTTGCATGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG