1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtctccttattctttgcatccagaaagatttactactataaattgtgttttctgaatactcaacagcaaggaaacaaatacctctcatctttatagttgtaacgtatttggccaatgaaatctcatattggagatgccatctgttgtagTGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACGCTAACAAAGGAATCCATATCATAAAGGGAACCGTGGCTGTTGGTTTTGA
species | Oryza sativa |
transcript | LOC_Os08g44340.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCA TGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACGEST: gi|33681535|gb|CF309774.1|CF309774
genomic: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCAgtaagtctcc ... tctgttgtagTGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACG
EST: AACCTTGGTGCA TGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACGEST: gi|29636698|gb|CB641707.1|CB641707
genomic: AACCTTGGTGCAgtaagtctcc ... tctgttgtagTGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACG
EST: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCA TGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACGEST: gi|117233824|gb|CT847763.1|CT847763
genomic: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCAgtaagtctcc ... tctgttgtagTGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACG
EST: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCA TGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACGEST: gi|58587930|gb|CF986238.1|CF986238
genomic: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCAgtaagtctcc ... tctgttgtagTGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACG
EST: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCA TGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACGEST: gi|66912833|gb|CX099681.1|CX099681
genomic: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCAgtaagtctcc ... tctgttgtagTGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACG
EST: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCA TGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACGEST: gi|12404688|gb|AU166289.1|AU166289
genomic: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCAgtaagtctcc ... tctgttgtagTGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACG
EST: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCA TGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACG
genomic: GAAGACCAACAATTTTGATGTCACTATGGTGTACCCTGAACCTTGGTGCAgtaagtctcc ... tctgttgtagTGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACG
agttgtaacgtatttggccaatgaaatctcatattggagatgccatctgttgtagTGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACGCTAACAAAGGAATCCATATCATAAAGGGAACCGTGGCTGTTGGTTTTGA
ttgtaac putative branch site (score: 110)
aatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctccttattctttgcatccagaaagatttactactataaattgtgttttctgaatactcaacagcaaggaaacaaatacctctcatctttatagttgtaacgtatttggccaatgaaatctcatattggagatgccatctgttgtagTGCCCCGTCTCTTCACTTCTGGCCTTGCTGCTTTCTACGAGGGATACTACGCTAACAAAGGAATCCATATCATAAAGGGAACCGTGGCTGTTGGTTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT