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gttagtatttctggctccattttcctgacgatttaattctacttttttttattgctagtgatgaaaagtgtggagcttcatcaatgctttggtgatgtttgcagTGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTG
species | Oryza sativa |
transcript | LOC_Os08g42740.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAAC TGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAEST: gi|86885710|gb|CI309837.1|CI309837
genomic: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAACgttagtattt ... atgtttgcagTGCACGGAGGAAGCTCATCGACCAGTGAACTGTGA
EST: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAAC TGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGGEST: gi|29635023|gb|CB640032.1|CB640032
genomic: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAACgttagtattt ... atgtttgcagTGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGG
EST: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAAC TGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGGEST: gi|29622679|gb|CB627690.1|CB627690
genomic: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAACgttagtattt ... atgtttgcagTGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGG
EST: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAAC TGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGGEST: gi|29671896|gb|CB668171.1|CB668171
genomic: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAACgttagtattt ... atgtttgcagTGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGG
EST: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAAC TGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGGEST: gi|29669832|gb|CB666107.1|CB666107
genomic: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAACgttagtattt ... atgtttgcagTGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGG
EST: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAAC TGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGG
genomic: ATGGGAACTATGATGTCTCATGCAATTGCAAATTCAGTTTTTGTTGGAACgttagtattt ... atgtttgcagTGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGG
tattgctagtgatgaaaagtgtggagcttcatcaatgctttggtgatgtttgcagTGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTG
atgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtatttctggctccattttcctgacgatttaattctacttttttttattgctagtgatgaaaagtgtggagcttcatcaatgctttggtgatgtttgcagTGCACGGAGGAAGCTCATCGACCAGTGAACTGTGAGACTGTTTCTAGGTGGATATTAAAGAATAGCGCAGAATCTGAAAATATGAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA