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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttcattgtcttatcatacatcgtgggcatgttaagtatggtacaaaatgacaaattttttgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA

Basic information

species Oryza sativa
transcript LOC_Os08g41460.8
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g41460.8 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM5G885392_T01 (Zea mays), 3'ss of exon 7
-------------------------------------------------------------------------------------------gtattttcattgtcttat-catacat-cgtgggcatgt-taagtatggt--acaaaatgacaaattttttga--taact---agGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA
                                                                                            ||| |  ||     |||  ||| ||   |    || | ||  ||| ||  |  || |  |   ||| || |  ||| |   |||| ||||| || ||||| || |||||||| || |||||||| || || |||||||| ||||||||||||||  ||| |||||| ||||||||||||| 
gtattttcccttttcgttgctcccagtcccatccaatacattactgtgccgttaacatggagcgcgcgcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcgtcgatgaatttccttttttctttaattaattttcagGGTCCGTGTCCAAACTGCGGGAATGAAAACCTCTCCTTCTTCGGTACCATACTGTCAGTGCCTAGCGGTGGCTCAAAAAACAGCGTGAAATGTGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29625905|gb|CB630916.1|CB630916
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33675916|gb|CF304155.1|CF304155
EST:     GACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTAGA
genomic: GACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33824610|gb|CF338118.1|CF338118
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33684521|gb|CF312760.1|CF312760
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|3763529|gb|AU030281.1|AU030281
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33682743|gb|CF310982.1|CF310982
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33684081|gb|CF312320.1|CF312320
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|58592436|gb|CF990744.1|CF990744
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|29683116|gb|CB679391.1|CB679391
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|86418696|gb|CI053497.1|CI053497
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|29683115|gb|CB679390.1|CB679390
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33681150|gb|CF309389.1|CF309389
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33675090|gb|CF303329.1|CF303329
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|29684942|gb|CB681217.1|CB681217
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|88852696|gb|CI008889.1|CI008889
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|88258912|gb|CI359302.1|CI359302
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|15855565|gb|BI808377.1|BI808377
EST:     TAGCACA-GCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGC-ATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|87029164|gb|CI276432.1|CI276432
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33676087|gb|CF304326.1|CF304326
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|29662553|gb|CB658828.1|CB658828
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|29663222|gb|CB659497.1|CB659497
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|89181923|gb|CI113429.1|CI113429
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGGCTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|25806680|gb|CA762641.1|CA762641
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|86843718|gb|CI339709.1|CI339709
EST:     GTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: GTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|86889949|gb|CI319938.1|CI319938
EST:     TAGCACAGGC-ATTACGAGTGCCATAGTGAA-GACTTTTTAATTTTGAA-                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|15854892|gb|BI807704.1|BI807704
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGAC-TTTTAA-TTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|86873804|gb|CI341237.1|CI341237
EST:     ATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: ATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33675688|gb|CF303927.1|CF303927
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|29615644|gb|CB620656.1|CB620656
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33675365|gb|CF303604.1|CF303604
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|88259834|gb|CI364325.1|CI364325
EST:     AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33675509|gb|CF303748.1|CF303748
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33675427|gb|CF303666.1|CF303666
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|86490518|gb|CI133151.1|CI133151
EST:     CGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: CGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|88253111|gb|CI351737.1|CI351737
EST:     AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|88258920|gb|CI359310.1|CI359310
EST:     AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: AATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|86505080|gb|CI147713.1|CI147713
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|88966192|gb|CI013068.1|CI013068
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|88257914|gb|CI360500.1|CI360500
EST:     AGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: AGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|86489048|gb|CI131681.1|CI131681
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
EST: gi|33675483|gb|CF303722.1|CF303722
EST:     TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAG                         GGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA
genomic: TAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 62 (downstream exon)
Score: 42

TTTCAGTTTCATCTTCACATGGTTTGCCGCACTGCCTCTAATATTTTGGGTAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGgtattttcat ... tgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacatcgtgggcatgttaagtatggtacaaaatgacaaattttttgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA
                                          ttttgat  putative branch site (score: 42)
                                        tttttt  CT-rich tract
                             aaaatgacaaattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattttcattgtcttatcatacatcgtgggcatgttaagtatggtacaaaatgacaaattttttgataactagGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA