1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattttttgttgctgttgagccctcaaaatatgtctgctattcgatgtgcttgaaatatagttcaaaatatgtttgccacctgttacttcaaataggtatcaactgtaaatccctttaccatcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAGAAGGCTACCAGCAATGGAGTCAGAAAAATTCCAAGATGACTTCCTAAT
species | Oryza sativa |
transcript | LOC_Os08g39070.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAG GTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAEST: gi|87035572|gb|CI190194.1|CI190194
genomic: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGgtattttttg ... atcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAG GTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAEST: gi|58600992|gb|CK011520.1|CK011520
genomic: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGgtattttttg ... atcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAG GTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAEST: gi|88960516|gb|CI006477.1|CI006477
genomic: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGgtattttttg ... atcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAA
EST: TTGTTTCCATGCAGAAAG GTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAEST: gi|58595959|gb|CK006487.1|CK006487
genomic: TTGTTTCCATGCAGAAAGgtattttttg ... atcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAG GTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAEST: gi|86599885|gb|CI256047.1|CI256047
genomic: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGgtattttttg ... atcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAG GTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAEST: gi|86593400|gb|CI258040.1|CI258040
genomic: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGgtattttttg ... atcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAG GTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAEST: gi|87035583|gb|CI190205.1|CI190205
genomic: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGgtattttttg ... atcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAA
EST: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAG GTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAEST: gi|27546787|gb|CA764823.2|CA764823
genomic: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGgtattttttg ... atcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAA
EST: ATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAG GTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAEST: gi|163929052|gb|EG710957.1|EG710957
genomic: ATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGgtattttttg ... atcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAA
EST: CAATAGCAGGGACCGTGTCATCCATCAATATCTTGTTTCCATGCAGAAAG GTGATATGCCACTGGACAATTCGCTGC
genomic: CAATAGCAGGGTCCGTGTTATCCATCAATATCTTGTTTCCATGCAGAAAGgtattttttg ... atcactgcagGTGATATGCCACTGGACAATTCGCTGC
gccacctgttacttcaaataggtatcaactgtaaatccctttaccatcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAGAAGGCTACCAGCAATGGAGTCAGAAAAATTCCAAGATGACTTCCTAAT
ttcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttttgttgctgttgagccctcaaaatatgtctgctattcgatgtgcttgaaatatagttcaaaatatgtttgccacctgttacttcaaataggtatcaactgtaaatccctttaccatcactgcagGTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCAAGCCTAGTAAGAAGGCTACCAGCAATGGAGTCAGAAAAATTCCAAGATGACTTCCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG