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gttggctagccttagtcactaatcactcaatgaaccaatcttcactttgagtagctgattgttttccttcaattttattcatttcagAAAGATGGATGTTTATGCCGCTACTAGCACTAGCACCAACGCCATCGACATAGGAGCTGTGGCGTCAAGAGCTATCCGGGAGCCTCGCGTTGTTGTTCAG
species | Oryza sativa |
transcript | LOC_Os08g38990.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTTCTCTGGGCTTTGATGCGAACGATGACTATGTTGAACACAAGAGAAG AAAGATGGATGTTTATGCCGCTACTAGCACTAGCACCAACGCCATCGACATEST: gi|218495535|gb|FG950464.1|FG950464
genomic: CTTTCTCTGGGCTTTGATGCGAACGATGACTATGTTGAACACAAGAGAAGgttggctagc ... ttcatttcagAAAGATGGATGTTTATGCCGCTACTAGCACTAGCACCAACGCCATCGACAT
EST: CTTTCTCTGGGCTTTGATGCGAACGATGACTATGTTGAACACAAGAGAAG AAAGATGGATGTTTATGCCGCTACTAGCACTAGCACCAACGCCATCGACATEST: gi|218484605|gb|FG964494.1|FG964494
genomic: CTTTCTCTGGGCTTTGATGCGAACGATGACTATGTTGAACACAAGAGAAGgttggctagc ... ttcatttcagAAAGATGGATGTTTATGCCGCTACTAGCACTAGCACCAACGCCATCGACAT
EST: CTTTCTCTGGGCTTTGATGCGAACGATGACTATGTTGAACACAAGAGAAG AAAGATGGATGTTTATGCCGCTACTAGCACTAGCACCAACGCCATCGACATEST: gi|29662844|gb|CB659119.1|CB659119
genomic: CTTTCTCTGGGCTTTGATGCGAACGATGACTATGTTGAACACAAGAGAAGgttggctagc ... ttcatttcagAAAGATGGATGTTTATGCCGCTACTAGCACTAGCACCAACGCCATCGACAT
EST: CTTTCTCTGGGCTTTGATGCGAACGATGACTATGTTGAACACAAGAGAAG AAAGATGGATGTTTATGCCGCTACTAGCACTAGCACCAACGCCATCGACAT
genomic: CTTTCTCTGGGCTTTGATGCGAACGATGACTATGTTGAACACAAGAGAAGgttggctagc ... ttcatttcagAAAGATGGATGTTTATGCCGCTACTAGCACTAGCACCAACGCCATCGACAT
aaccaatcttcactttgagtagctgattgttttccttcaattttattcatttcagAAAGATGGATGTTTATGCCGCTACTAGCACTAGCACCAACGCCATCGACATAGGAGCTGTGGCGTCAAGAGCTATCCGGGAGCCTCGCGTTGTTGTTCAG
agctgat putative branch site (score: 2)
ttttattc putative PPT
ttcaattttattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggctagccttagtcactaatcactcaatgaaccaatcttcactttgagtagctgattgttttccttcaattttattcatttcagAAAGATGGATGTTTATGCCGCTACTAGCACTAGCACCAACGCCATCGACATAGGAGCTGTGGCGTCAAGAGCTATCCGGGAGCCTCGCGTTGTTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT