1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcttcacagcttcatgataatatattacttggttctttgatttttgtctgcagctaatttggtatcgtctgttagTGCATCGCCTACTCGGCACAGCGCTAGCCCTCCTCTCAAGGGATCAACACCACGCAGGAGCCCTGCTCGCAATGGAAGTCCTGAAAAAGAGACAAATGGA
species | Oryza sativa |
transcript | LOC_Os08g37960.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCAGAAGCAGGAGCAGAAGCAGGAGTCGGAGCCGCTCATTTCATAG TGCATCGCCTACTCGGCACAGCGCTAGCCCTCCTCTCAAGGGATCAACACCEST: gi|58685259|gb|CK073946.1|CK073946
genomic: AGCAGAAGCAGGAGCAGAAGCAGGAGTCGGAGCCGCTCATTTCATAGgtgcttcaca ... cgtctgttagTGCATCGCCTACTCGGCACAGCGCTAGCCCTCCTCTCAAGGGATCAACACC
EST: CTCATTTCATAG TGCATCGCCTACTCGGCACAGCGCTAGCCCTCCTCTCAAGGGATCAACACCEST: gi|18388196|gb|BM421394.1|BM421394
genomic: CTCATTTCATAGgtgcttcaca ... cgtctgttagTGCATCGCCTACTCGGCACAGCGCTAGCCCTCCTCTCAAGGGATCAACACC
EST: CTCATTTCATAG T-CATCGCCTACTCGGCACAGCAGCTA-CCCTCCTCTCAAGGGATCAACACEST: gi|86426964|gb|CI072061.1|CI072061
genomic: CTCATTTCATAGgtgcttcaca ... cgtctgttagTGCATCGCCTACTCGGCACAGC-GCTAGCCCTCCTCTCAAGGGATCAACAC
EST: AAAAGCAGAAGCAGGAGCAGAAGCAGGAGTCGGAGCCGCTCATTTCATAG TGCATCGCCTACTCGGCACAGCGCTAGCCCTCCTCTCAAGGGATCAACACCEST: gi|15856504|gb|BI809316.1|BI809316
genomic: AAAAGCAGAAGCAGGAGCAGAAGCAGGAGTCGGAGCCGCTCATTTCATAGgtgcttcaca ... cgtctgttagTGCATCGCCTACTCGGCACAGCGCTAGCCCTCCTCTCAAGGGATCAACACC
EST: ACGCAGAA-CACGGAGCAGAA-CACGGAGTCGGA-CCGCTCATTTCATAG TGCATCGCCTACTCGGCACAGCGCTAGCCCTCCTCTCAAGGGATCAACACC
genomic: AAGCAGAAGCA-GGAGCAGAAGCA-GGAGTCGGAGCCGCTCATTTCATAGgtgcttcaca ... cgtctgttagTGCATCGCCTACTCGGCACAGCGCTAGCCCTCCTCTCAAGGGATCAACACC
tatattacttggttctttgatttttgtctgcagctaatttggtatcgtctgttagTGCATCGCCTACTCGGCACAGCGCTAGCCCTCCTCTCAAGGGATCAACACCACGCAGGAGCCCTGCTCGCAATGGAAGTCCTGAAAAAGAGACAAATGGA
agctaat putative branch site (score: 37)
tttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttcacagcttcatgataatatattacttggttctttgatttttgtctgcagctaatttggtatcgtctgttagTGCATCGCCTACTCGGCACAGCGCTAGCCCTCCTCTCAAGGGATCAACACCACGCAGGAGCCCTGCTCGCAATGGAAGTCCTGAAAAAGAGACAAATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA