1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgttttacttagattcagttccctgggtctgcgaggatggtcggcttgaacatttcaacttttttgtggaactaattttggatccttcattacttggcagTTCTTTAGGTTGCGTTCTAAGTCTTTTCTTTCTGACCTGATGCTGGCTGGGGAGAAATTTTGCCGAGGAGACTGGTCAAAGATTAAAAAGGAGTACCGTT
species | Oryza sativa |
transcript | LOC_Os08g33850.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGATGGGAAATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAG TTCTTTAGGTTGCGTTCTAAGTCTTTTCTTTCTGACCTGATGCTGGCTGGGEST: gi|38482258|gb|CF966306.1|CF966306
genomic: ACCTTGATGGGAAATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAGgtttatttcc ... tacttggcagTTCTTTAGGTTGCGTTCTAAGTCTTTTCTTTCTGACCTGATGCTGGCTGGG
EST: ACCTTGATGGGAAATGGTTAGCAACAGAGAATTTCTACCATACTTCCAAG TTCTTTAGGTTGCGTTCTAAGTCTTTTCTTTCTGACCTGATGCTGGCTGGGEST: gi|87019097|gb|CI297298.1|CI297298
genomic: ACCTTGATGGGAAATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAGgtttatttcc ... tacttggcagTTCTTTAGGTTGCGTTCTAAGTCTTTTCTTTCTGACCTGATGCTGGCTGGG
EST: AATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAG TTCTTTAGGTTGCGTTCTAAGTCTTTTCTTTCTGACCTGATGCTGGCTGGG
genomic: AATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAGgtttatttcc ... tacttggcagTTCTTTAGGTTGCGTTCTAAGTCTTTTCTTTCTGACCTGATGCTGGCTGGG
ttgaacatttcaacttttttgtggaactaattttggatccttcattacttggcagTTCTTTAGGTTGCGTTCTAAGTCTTTTCTTTCTGACCTGATGCTGGCTGGGGAGAAATTTTGCCGAGGAGACTGGTCAAAGATTAAAAAGGAGTACCGTT
aactaat putative branch site (score: 20)
tccttcatt putative PPT
atttcaactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttttacttagattcagttccctgggtctgcgaggatggtcggcttgaacatttcaacttttttgtggaactaattttggatccttcattacttggcagTTCTTTAGGTTGCGTTCTAAGTCTTTTCTTTCTGACCTGATGCTGGCTGGGGAGAAATTTTGCCGAGGAGACTGGTCAAAGATTAAAAAGGAGTACCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - -tccctgg
- - - - - - - - - - - - - - ctgcgag
- - - - - - - - - - - - - - - - - - - - - -gcttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatcc