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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctttactttgtaccattataagtattaatgtgctaattcattacttcctagtgcactttgccaagcaaataagtatcaatttttacttgtgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG

Basic information

species Oryza sativa
transcript LOC_Os08g32630.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32630.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM5G851815_T02 (Zea mays), 3'ss of exon 6
cctttactttgtaccattataagtattaatgtgctaattcattacttcctagtgcactttgccaagcaaataagtatcaatttttacttgtgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG
  |  | ||  |    ||         |   ||| | |  |  | ||    ||   | |  ||   |    ||  ||  | ||| |      ||   |||||| | ||  | |||||||||| |||| || |||| ||||||||| ||||||||||||| |||||||| ||||| || || |||
gataaaattcctcttcttgcggtggcgagcctgcaagtggaaaaattttgtgttggcatctccttccctcaaataatggaatttcatgctatttttgcagGTACTGAAACTTAGTGATGGTGATTCTTTGTCTTGCCGACTTGTTGTTGATGCTATGGGAAATTTTTCTCCAATAGTACGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29676352|gb|CB672627.1|CB672627
EST:     TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCT                         GTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGAT
genomic: TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCTgtaagcaaat ... tgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGAT
EST: gi|300215548|gb|HO088174.1|HO088174
EST:     TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCT                         GTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGAT
genomic: TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCTgtaagcaaat ... tgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGAT
EST: gi|58656158|gb|CK044838.1|CK044838
EST:     TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCT                         GTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGAT
genomic: TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCTgtaagcaaat ... tgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctagtgcactttgccaagcaaataagtatcaatttttacttgtgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG
                                             tgttcctc  CT-rich tract
                      aaataagtatcaattt  TA-rich tract