1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...cctttactttgtaccattataagtattaatgtgctaattcattacttcctagtgcactttgccaagcaaataagtatcaatttttacttgtgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG
species | Oryza sativa |
transcript | LOC_Os08g32630.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCT GTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGATEST: gi|300215548|gb|HO088174.1|HO088174
genomic: TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCTgtaagcaaat ... tgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGAT
EST: TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCT GTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGATEST: gi|58656158|gb|CK044838.1|CK044838
genomic: TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCTgtaagcaaat ... tgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGAT
EST: TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCT GTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGAT
genomic: TATTTGAGGGGAAAAGTTTGTCAAGCATTTCTGTTCATGATGACTTTGCTgtaagcaaat ... tgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGAT
ttcctagtgcactttgccaagcaaataagtatcaatttttacttgtgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG
tgttcctc CT-rich tract
aaataagtatcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctttactttgtaccattataagtattaatgtgctaattcattacttcctagtgcactttgccaagcaaataagtatcaatttttacttgtgttcctcagGTATTAAACTTGAGTGATGGTGGTTCTCTGCCTTGTCGACTTGTTATTGATGCTATGGGTAATTTTTCCCCAATTGTGCGACAG
- - - - -tgtacca
- - - - - - - - - - - - - -aatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccaagc