1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgaatattctctttgccctttttttggctgcttttgttttaagtcttatttttggagatgtgctgaagtttgtaacgtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAG
species | Oryza sativa |
transcript | LOC_Os08g31840.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTG GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAEST: gi|86883180|gb|CI328639.1|CI328639
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
EST: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTG GTCAAATTCCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAEST: gi|325493709|gb|JG458233.1|JG458233
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
EST: CAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTG GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAEST: gi|88557068|gb|CI487446.1|CI487446
genomic: CAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
EST: GATTTTGCCATGATGAATTG GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAEST: gi|88548655|gb|CI476470.1|CI476470
genomic: GATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
EST: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTG GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAEST: gi|88528600|gb|CI456848.1|CI456848
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
EST: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTG GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
genomic: TTGTATTCCAAGTTGGATTGGCTCTATTGAGATTTTGCCATGATGAATTGgtgaatattc ... gtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAA
ttttgttttaagtcttatttttggagatgtgctgaagtttgtaacgtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAG
ttgtaac putative branch site (score: 13)
ttttaagtcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatattctctttgccctttttttggctgcttttgttttaagtcttatttttggagatgtgctgaagtttgtaacgtgctgccagGTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG