1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatacagtttgttctccatatattttcgaatttcattacttggtggatctgttgtctgtaatctgacgtatgtgttgtggttctcactcaccttctgcagGGTCTTTTGCTGGTCTAGGTTTTCTTGCGTGGTACTTGGCTGGTAAACTTAAGGCTTTTGATCGCAAAGGCCACATTGCAAAGTTATGCATAGTATTTCT
species | Oryza sativa |
transcript | LOC_Os08g27040.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGTGTTATCAAGGAAGGCCACAAGAGCTTTCCAAGTGGGCATTCTTCAT GGTCTTTTGCTGGTCTAGGTTTTCTTGCGTGGTACTTGGCTGGTAAACTTAEST: gi|86831428|gb|CI299486.1|CI299486
genomic: GAGTGTTATCAAGGAAGGCCACAAGAGCTTTCCAAGTGGGCATTCTTCATgtaagacatg ... ccttctgcagGGTCTTTTGCTGGTCTAGGTTTTCTTGCGTGGTACTTGGCTGGTAAACTTA
EST: GAGTGTTATCAAGGAAGGCCACAAGAGCTTTCCAAGTGGGCATTCTTCAT GGTCTTTTGCTGGTCTAGGTTTTCTTGCGTGGTACTTGGCTGGTAAACTTA
genomic: GAGTGTTATCAAGGAAGGCCACAAGAGCTTTCCAAGTGGGCATTCTTCATgtaagacatg ... ccttctgcagGGTCTTTTGCTGGTCTAGGTTTTCTTGCGTGGTACTTGGCTGGTAAACTTA
gatctgttgtctgtaatctgacgtatgtgttgtggttctcactcaccttctgcagGGTCTTTTGCTGGTCTAGGTTTTCTTGCGTGGTACTTGGCTGGTAAACTTAAGGCTTTTGATCGCAAAGGCCACATTGCAAAGTTATGCATAGTATTTCT
cactcac putative branch site (score: 17)
ttctcactcaccttct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatacagtttgttctccatatattttcgaatttcattacttggtggatctgttgtctgtaatctgacgtatgtgttgtggttctcactcaccttctgcagGGTCTTTTGCTGGTCTAGGTTTTCTTGCGTGGTACTTGGCTGGTAAACTTAAGGCTTTTGATCGCAAAGGCCACATTGCAAAGTTATGCATAGTATTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - ttgttct
- - - - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - cttggtg
- - - - - - - - - - - - - - - - - - - - - - - - ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttg